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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 34ATAC-seq
  • 13total RNA-seq
  • 10snATAC-seq
  • 4MeRIP-seq
  • 2Hi-C
Assay category
  • 44DNA accessibility
  • 13Transcription
  • 23D chromatin structure
Target of assay
  • 2control
  • 2nucleotide modification
Date released
  • 24May, 2022
  • 18February, 2023
  • 8January, 2021
  • 5March, 2019
  • 4November, 2020
  • 2August, 2021
  • 1May, 2021
  • 1October, 2017
Available data
  • 26fastq
  • 25bam
  • 18bed narrowPeak
  • 6txt
  • 2bed broadPeak
  • 1bedpe
  • 1bedpe bed3+
  • 1bigWig
  • 1hic
  • 1tsv
Organism
  • 63Homo sapiens
Biosample type
  • 63tissue
Organ
  • 221pancreas
  • 191kidney
  • epithelium
  • 71liver
  • heart
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
  • 0nerve
Project
  • 37AMP
  • 26T1D
Genome assembly (visualization)
  • 22hg19
  • 3GRCh38
Lab
  • AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
lab.title!
  • AMP-T2D consortium
organ_slims!
  • heart
  • epithelium
BIOSAMPLE
ASSAY

63 results

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Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
tissue
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pancreas14
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