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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 218ChIP-seq
  • 152ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 218DNA binding
  • 171DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 187August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 61May, 2021
  • 56February, 2023
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 14March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6July, 2019
  • 6November, 2018
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 687bam
  • 621bigWig
  • 469fastq
  • 417tsv
  • 212bed narrowPeak
  • 89bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 936Homo sapiens
Biosample type
  • 503tissue
  • 346primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 944pancreas
  • 791liver
  • 684connective tissue
  • 523epithelium
  • 491adipose tissue
  • 393heart
  • 353kidney
  • 285brain
  • 235vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 21vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 758AMP
  • 152HPAP
  • 34T1D
Genome assembly (visualization)
  • 656hg19
  • 635GRCh38
Lab
  • 723AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 81inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
assay_title!
  • FAIRE-seq
BIOSAMPLE
ASSAY

944 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans2785058674311
body of pancreas3354242
pancreas216241211
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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