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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
Assay category
99
DNA binding
Target of assay
745
histone modification
744
histone
499
transcription factor
384
narrow histone mark
359
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
93
bam
91
bigWig
90
bed narrowPeak
84
fastq
83
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
99
Homo sapiens
Biosample type
65
cell line
23
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
99
AMP
Genome assembly (visualization)
90
hg19
86
GRCh38
Lab
93
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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