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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
Assay category
  • 114DNA binding
Target of assay
  • 982histone modification
  • 981histone
  • 509transcription factor
  • 499narrow histone mark
  • 481broad histone mark
  • 343control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 39November, 2017
  • 24November, 2018
  • 11October, 2018
  • 8August, 2017
  • 6January, 2019
  • 5May, 2019
  • 5May, 2021
  • 4April, 2019
  • 4December, 2017
  • 4June, 2019
  • 2December, 2018
  • 1August, 2021
  • 1November, 2019
Available data
  • 108bam
  • 106bigWig
  • 105bed narrowPeak
  • 98bigBed narrowPeak
  • 94fastq
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 2bed bed3+
  • 1tar
Organism
  • 114Homo sapiens
Biosample type
  • 67cell line
  • 26tissue
  • 11in vitro differentiated cells
  • 10primary cell
Organ
  • 60liver
  • 10blood
  • 10bodily fluid
  • 10connective tissue
  • 9pancreas
  • 8epithelium
  • 6heart
  • 5adipose tissue
  • 5vasculature
  • 4blood vessel
  • 3brain
  • 3kidney
  • 3spleen
  • 1artery
  • 1eye
Project
  • 114AMP
Genome assembly (visualization)
  • 105hg19
  • 100GRCh38
Lab
  • 108AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 3inconsistent control run_type
BIOSAMPLE
ASSAY

114 results

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Clear Filters
ChIP-seq
cell line
HepG256
GM1287810
EndoC_BH11
tissue
body of pancreas5
heart left ventricle3
omental fat pad3
spleen3
islet of Langerhans2
in vitro differentiated cells
embryonic stem cell5
adipocyte4
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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