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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
Assay category
103
DNA binding
Target of assay
870
histone modification
869
histone
460
transcription factor
444
narrow histone mark
425
broad histone mark
306
control
98
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
39
November, 2017
24
November, 2018
11
October, 2018
6
January, 2019
5
May, 2019
4
April, 2019
4
August, 2017
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
102
bam
100
bigWig
99
bed narrowPeak
96
bigBed narrowPeak
88
fastq
10
bed broadPeak
10
bigBed broadPeak
2
bed bed3+
1
tar
Organism
103
Homo sapiens
Biosample type
67
cell line
26
tissue
in vitro differentiated cells
10
primary cell
Organ
58
liver
10
blood
10
bodily fluid
9
pancreas
6
connective tissue
6
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
3
spleen
1
artery
1
eye
Project
103
AMP
Genome assembly (visualization)
99
hg19
94
GRCh38
Lab
102
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
+ See 9 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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