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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
745
histone modification
744
histone
499
transcription factor
384
narrow histone mark
359
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
36
November, 2017
24
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
98
bam
96
bigWig
95
bed narrowPeak
89
fastq
88
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bed bed3+
1
tar
Organism
104
Homo sapiens
Biosample type
67
cell line
26
tissue
11
in vitro differentiated cells
primary cell
Organ
60
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
spleen
3
vasculature
1
artery
1
kidney
Project
104
AMP
Genome assembly (visualization)
95
hg19
91
GRCh38
Lab
98
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
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