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Citing CMDGA
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Annotation type
19
accessible chromatin
11
gene expression
10
target gene predictions
4
variant allelic effects
3
Fine-mapped variants
3
caQTL
3
candidate regulatory elements
3
chromatin state
3
eQTL
2
binding sites
1
histone modifications
Annotation Category
3
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
CD4-positive helper T cell
2
endothelial cell
1
coronary artery
1
fibroblast of the aortic adventitia
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
type I muscle cell
1
type II muscle cell
Organ
2
epithelium
1
artery
1
blood vessel
1
heart
1
vasculature
Date released
2
February, 2023
1
October, 2022
Software used
3
rasqual
1
eigenmt
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
Showing 3 of 3 results
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FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP