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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
7
gene expression
4
candidate regulatory elements
3
chromatin state
2
histone modifications
2
target gene predictions
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
18
A549
13
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
liver
7
mature neutrophil
6
adipocyte
6
adipose tissue
6
adrenal gland
6
heart left ventricle
6
mononuclear cell
6
stomach
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
left cardiac atrium
5
sigmoid colon
5
spleen
5
temporal lobe
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
layer of hippocampus
4
psoas muscle
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
endometrium adenocarcinoma
3
fibroblast of dermis
3
heart
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
keratinocyte
3
kidney
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
ovary
3
pancreas
3
regulatory T cell
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
small intestine
3
stomach smooth muscle
3
substantia nigra
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
brain
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
frontal cortex
2
kidney tubule cell
2
lower leg skin
2
lung
2
mesenchymal stem cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
skeletal muscle satellite cell
2
testis
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELR
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18507
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H4
1
H54
1
HAP-1
1
HCT116
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HuH-7
1
HuH-7.5
1
JVM-2 cell
1
KBM-7
1
KMS-11
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LoVo cell
1
Loucy
1
M059J
1
MG63
1
MM.1S
1
NB4
1
NCI-H226 cell
1
NCI-H460 cell
1
NCI-H929
1
NT2-D1 cell
1
OCI-LY1
Organ
3
kidney
Life stage
embryonic
3
adult
Date released
2
September, 2022
1
May, 2019
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
embryonic
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR205PVO
released
Annotation file set
: Chromatin states for BSS01097 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181LMN
released
Annotation file set
: Chromatin states for BSS01096 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394RHU
released
Annotation file set
: ChromHMM 12-state model for adult kidney from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP