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Clear Filters
Embeddings type
  • 33Gene expression
  • 6Accessible chromatin
Embeddings Category
  • 6umap
Underlying Assay
  • 410X snATAC-seq
  • 2sciATAC-seq
Available data
  • 5h5ad
  • 3mtx
  • 3tsv
  • 1bed bed3
  • 1cloupe
  • 1tbi
File set status
  • 6released
Genome assembly (visualization)
  • 1hg19
Organism
  • 5Homo sapiens
Biosample type
  • 5tissue
  • 1primary cell
Biosample term
  • 2islet of Langerhans
  • 1carotid canal
  • 1lung
  • 1pancreas
  • 1peripheral blood mononuclear cell
  • 1skeletal muscle tissue
  • 1tissues
Tissue term
  • 2pancreas
  • 1blood
  • 1carotid canal
  • 1lung
  • 1skeletal muscle tissue
  • 1tissues
Organ
  • 2pancreas
  • 1blood
  • 1bodily fluid
  • 1bone element
  • 1lung
  • 1musculature of body
Date released
  • 2May, 2022
  • 1August, 2021
  • 1February, 2021
  • 1November, 2021
  • 1September, 2021
Software used
  • 1cellranger-atac
Lab
  • 2AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
  • 1Xin Sun, UCSD
Project
  • 3AMP
  • 1ENCODE
  • 1LungMap
  • 1T1D
RFA
  • 3AMP
  • 1ENCODE3
  • 1LungMap2
  • 1T1D

Showing 6 of 6 results

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  • FileSet

    DSR384UWH

    released

    Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR132DPW

    released

    Embeddings file set: Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR838CLG

    released

    Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR722OVR

    released

    Embeddings file set: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
    Lab: Xin Sun, UCSD
    Project: LungMap
  • FileSet

    DSR322WJB

    released

    Embeddings file set: Islet snATAC-seq from control samples
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR047LET

    released

    Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
    Lab: Kyle Gaulton, UCSD
    Project: T1D
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