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Citing CMDGA
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Assay category
1
DNA accessibility
1
DNA binding
1
DNA methylation
Assay
1
ChIP-seq
1
DNase-seq
1
WGBS
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Biosample type
3
tissue
Organ
3
liver
Life stage
1
adult
1
child
1
embryonic
Available data
3
fastq
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Platform
51
Illumina HiSeq 2000
7
MiSeq
4
Illumina Genome Analyzer IIx
3
Illumina HiSeq 2500
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer
2
Illumina Genome Analyzer II
1
Illumina HiSeq 4000
Run type
2
single-ended
1
paired-ended
Read length (nt)
2
36
1
100
Mapped read length (nt)
1
36
Library made from
3
DNA
Date released
2
August, 2017
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
anisogenic
Audit category:
1
inconsistent control read length
Showing 3 of 3 results
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Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR621783
released
WGBS
of liver
Homo sapiens
liver male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP