Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Assay
  • 1ATAC-seq
Pipeline status
  • 1active
Pipeline groups
  • 1ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
  • 5MACS2
  • 5Samtools
  • 4BEDTools
  • 3BWA
  • 3Picard
  • 3deepTools
  • 3fastp
  • 2Bowtie 2
  • 2STAR
  • bedGraphToBigWig
  • 1ChromHMM
  • 1RSEM
  • 1SALMON
  • 1Trim Galore
  • 0lrna-index-rsem
Developed by
  • AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
lab.title!
  • AMP-T2D consortium
title!
  • ATAC-seq Pipeline Cebola Lab
analysis_steps.versions.software_versions.software.title!
  • bedGraphToBigWig

Showing 1 of 1 results

table-tab-iconmatrix-icon

  • Pipeline

    DPL961ZQY

    active

    ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
    Assays: ATAC-seq
    Software: Trim Galore, BWA, Samtools, Picard, MACS2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego