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Assay
1
ATAC-seq
1
ChIP-seq
Pipeline status
2
active
Pipeline groups
1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
ChIP-seq Pipeline Ellinor Lab
Software
5
MACS2
5
Samtools
4
BEDTools
3
BWA
3
Picard
3
deepTools
3
fastp
2
Bowtie 2
2
STAR
bedGraphToBigWig
1
ChromHMM
1
Peak alignment
1
RSEM
1
SALMON
1
Trim Galore
0
lrna-index-rsem
Developed by
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Patrick T. Ellinor, Broad
lab.title!
AMP-T2D consortium
title!
ATAC-seq Pipeline Cebola Lab
analysis_steps.versions.software_versions.software.title!
bedGraphToBigWig
Showing 2 of 2 results
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Pipeline
DPL961ZQY
active
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
ATAC-seq
Software:
Trim Galore, BWA, Samtools, Picard, MACS2
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays:
ChIP-seq
Software:
BWA, Picard, MACS2, BEDTools, ChromHMM