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1
ATAC-seq
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1
active
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ATAC-seq Pipeline (ENCODE replicated)
1
ATAC-seq Pipeline (ENCODE unreplicated)
1
RNA-seq Pipeline 2 (Paired-ended, ENCODE)
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TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
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Picard
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Digital genomic footprinting
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lrna-align-tophat-pe
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AMP-T2D consortium
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Digital genomic footprinting
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Pipeline
DPL967MZM
active
ATAC-seq Pipeline (ENCODE unreplicated)
Assays:
ATAC-seq
Software:
Bowtie 2, Samtools, Picard, cutadapt, sambamba, Irreproducible Discovery Rate (IDR), overlap_peaks.py, MACS2, BEDTools, bedToBigBed