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Assay
1
ATAC-seq
1
RNA-seq
Pipeline status
2
active
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1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
ChIP-Atlas Pipeline
1
ChIP-seq Pipeline Cebola Lab
1
DNase-seq Pipeline (ENCODE)
1
RNA-seq Pipeline (Paired-ended, ENCODE)
1
RNA-seq Pipeline (Single-ended, ENCODE)
1
RNA-seq Pipeline 2 (Paired-ended, ENCODE)
1
RNA-seq Pipeline 2 (Single-ended, ENCODE)
1
RNA-seq Pipeline Cebola Lab
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2
bedGraphToBigWig
1
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1
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1
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fastp
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lrna-align-tophat-pe
Developed by
1
AMP-T2D consortium
1
Ines Cebola, Imperial College London
Showing 2 of 2 results
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Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL610SXT
active
RNA-seq Pipeline (Paired-ended, ENCODE)
Assays:
RNA-seq
Software:
STAR, bedGraphToBigWig, RSEM