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Assay
1
ATAC-seq
1
DNase-seq
Pipeline status
2
active
Pipeline groups
1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
ChIP-seq Pipeline Cebola Lab
1
DNase-seq Pipeline (ENCODE)
1
RNA-seq Pipeline 2 (Paired-ended, ENCODE)
RNA-seq Pipeline Cebola Lab
Software
2
Samtools
1
BEDOPS
1
BEDTools
1
BWA
1
Bowtie 2
1
Digital genomic footprinting
1
MACS2
1
Picard
1
bedGraphToBigWig
1
bedToBigBed
1
cutadapt
1
deepTools
1
fastp
1
hotspot2
0
lrna-align-tophat-pe
Developed by
1
AMP-T2D consortium
1
Ines Cebola, Imperial College London
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RNA-seq Pipeline Cebola Lab
Showing 2 of 2 results
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Pipeline
DPL930NXT
active
DNase-seq Pipeline (ENCODE)
Assays:
DNase-seq
Software:
hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed
Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig