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Assay
1
DNase-seq
RNA-seq
Pipeline status
1
active
Pipeline groups
1
DNase-seq Pipeline (ENCODE)
Software
9
BEDTools
9
MACS2
9
Samtools
8
Bowtie 2
8
Picard
8
bedToBigBed
8
cutadapt
7
sambamba
5
overlap_peaks.py
4
Irreproducible Discovery Rate (IDR)
4
ptools_bin
3
Phantompeakqualtools
1
BEDOPS
1
BWA
1
CoLo
1
Digital genomic footprinting
1
SRA_Toolkit
1
bedGraphToBigWig
1
getVariantOverlap.py
1
hotspot2
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
1
unknown
0
lrna-align-tophat-pe
Developed by
1
AMP-T2D consortium
assay_term_names!
RNA-seq
Showing 1 of 1 results
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Pipeline
DPL930NXT
active
DNase-seq Pipeline (ENCODE)
Assays:
DNase-seq
Software:
hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed