Showing 4 of 4 results

• Pipeline

  DPL930NXT

  active

  DNase-seq Pipeline (ENCODE)

  Assays: DNase-seq

  Software: hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed

• Pipeline

  DPL779IGH

  active

  ATAC-seq Pipeline Cebola Lab (Hepatocytes)

  Assays: ATAC-seq

  Software: fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig

• Pipeline

  DPL741HGX

  active

  ATAC-seq Pipeline Cebola Lab

  Assays: ATAC-seq

  Software: fastp, Bowtie 2, Samtools, Picard, BEDTools, deepTools, MACS2, bedGraphToBigWig

• Pipeline

  DPL983WYV

  active

  ChIP-Atlas Pipeline

  Assays: ChIP-seq, DNase-seq

  Software: SRA_Toolkit, Bowtie 2, Samtools, BEDTools, bedGraphToBigWig, MACS2, unknown, CoLo