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5
ChIP-seq
ATAC-seq
2
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2
RNA-seq
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DNase-seq
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1
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
1
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
TF ChIP-seq Pipeline 2 (ENCODE replicated)
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
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2
BEDTools
2
Bowtie 2
2
MACS2
2
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2
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2
bedToBigBed
2
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2
overlap_peaks.py
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ptools_bin
2
sambamba
0
lrna-index-rsem
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2
AMP-T2D consortium
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TF ChIP-seq Pipeline 2 (ENCODE replicated)
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
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ATAC-seq
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Pipeline
DPL721SCW
active
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, overlap_peaks.py, bedToBigBed, MACS2, BEDTools
Pipeline
DPL064PJG
active
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Bowtie 2, Samtools, sambamba, cutadapt, Picard, ptools_bin, MACS2, BEDTools, overlap_peaks.py, bedToBigBed