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5
ChIP-seq
4
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2
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2
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Pipeline status
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active
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1
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
TF ChIP-seq Pipeline 2 (ENCODE replicated)
1
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
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2
BEDTools
2
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2
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2
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2
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bedToBigBed
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2
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1
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1
Phantompeakqualtools
1
overlap_peaks.py
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lrna-index-rsem
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2
AMP-T2D consortium
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TF ChIP-seq Pipeline 2 (ENCODE replicated)
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
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Pipeline
DPL608JFY
active
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed
Pipeline
DPL064PJG
active
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Bowtie 2, Samtools, sambamba, cutadapt, Picard, ptools_bin, MACS2, BEDTools, overlap_peaks.py, bedToBigBed