Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Assay
3
ChIP-seq
2
ATAC-seq
2
RNA-seq
1
DNase-seq
1
Mint-ChIP-seq
Pipeline status
1
active
Pipeline groups
1
TF ChIP-seq Pipeline 2 (ENCODE replicated)
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
Software
3
BEDTools
3
Bowtie 2
3
MACS2
3
Picard
3
Samtools
3
bedToBigBed
3
cutadapt
3
ptools_bin
3
sambamba
overlap_peaks.py
1
Irreproducible Discovery Rate (IDR)
1
Phantompeakqualtools
0
lrna-index-rsem
Developed by
1
AMP-T2D consortium
title!
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
analysis_steps.versions.software_versions.software.title!
overlap_peaks.py
Showing 1 of 1 results
table-tab-icon
matrix-icon
Pipeline
DPL935TZE
active
TF ChIP-seq Pipeline 2 (ENCODE replicated)
Assays:
ChIP-seq, Mint-ChIP-seq
Software:
Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed