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Assay
1
ATAC-seq
Pipeline status
1
active
Pipeline groups
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
ChIP-seq Pipeline Cebola Lab
Software
5
MACS2
5
Samtools
4
BEDTools
Picard
3
BWA
3
deepTools
3
fastp
2
Bowtie 2
2
STAR
2
bedGraphToBigWig
1
ChromHMM
1
RSEM
1
SALMON
Trim Galore
0
lrna-index-rsem
0
sambamba
Developed by
AMP-T2D consortium
1
Ines Cebola, Imperial College London
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AMP-T2D consortium
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Trim Galore
Picard
title!
ChIP-seq Pipeline Cebola Lab
Showing 1 of 1 results
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Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig