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Assay
1
ATAC-seq
1
ChIP-seq
Pipeline status
2
active
Pipeline groups
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
1
ChIP-seq Pipeline Cebola Lab
Software
5
MACS2
5
Samtools
4
BEDTools
3
BWA
3
Picard
3
deepTools
3
fastp
2
Bowtie 2
2
STAR
2
bedGraphToBigWig
1
ChromHMM
1
RSEM
1
SALMON
1
Trim Galore
0
lrna-index-rsem
0
sambamba
Developed by
AMP-T2D consortium
2
Ines Cebola, Imperial College London
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AMP-T2D consortium
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ATAC-seq Pipeline Cebola Lab
Showing 2 of 2 results
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Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL245EPK
active
ChIP-seq Pipeline Cebola Lab
Assays:
ChIP-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig