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Assay
2
ATAC-seq
1
ChIP-seq
1
RNA-seq
Pipeline status
2
active
Pipeline groups
1
ChIP-seq Pipeline Cebola Lab
1
RNA-seq Pipeline Cebola Lab
Software
2
BEDTools
2
MACS2
2
STAR
2
Samtools
2
deepTools
2
fastp
1
BWA
1
Bowtie 2
1
ChromHMM
1
Picard
1
RSEM
1
SALMON
1
bedGraphToBigWig
Developed by
2
Ines Cebola, Imperial College London
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AMP-T2D consortium
Showing 2 of 2 results
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Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
fastp, STAR, SALMON, Samtools, deepTools
Pipeline
DPL245EPK
active
ChIP-seq Pipeline Cebola Lab
Assays:
ChIP-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig