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Assay
  • 2ATAC-seq
  • 1ChIP-seq
  • 1RNA-seq
  • 1single cell isolation followed by RNA-seq
Pipeline status
  • 2active
Pipeline groups
  • 1ChIP-seq Pipeline Ellinor Lab
  • 1RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
  • 1BEDTools
  • 1BWA
  • 1ChromHMM
  • 1MACS2
  • 1Picard
  • 1RSEM
  • 1STAR
Developed by
  • AMP-T2D consortium
  • Ines Cebola, Imperial College London
  • 1Kyle Gaulton, UCSD
  • 1Patrick T. Ellinor, Broad
lab.title!
  • AMP-T2D consortium
  • Ines Cebola, Imperial College London

Showing 2 of 2 results

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  • Pipeline

    DPL172PKH

    active

    RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
    Assays: RNA-seq
    Software: STAR, RSEM

  • Pipeline

    DPL118KGX

    active

    ChIP-seq Pipeline Ellinor Lab
    Assays: ChIP-seq
    Software: BWA, Picard, MACS2, BEDTools, ChromHMM
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