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Assay
4
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
3
active
Pipeline groups
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
2
STAR
1
RSEM
1
SALMON
1
Samtools
1
deepTools
1
fastp
Developed by
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Ines Cebola, Imperial College London
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AMP-T2D consortium
Showing 3 of 3 results
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Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
STAR, RSEM
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
fastp, STAR, SALMON, Samtools, deepTools