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Assay
4
ATAC-seq
2
ChIP-seq
2
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
4
active
Pipeline groups
1
ChIP-seq Pipeline Cebola Lab
1
ChIP-seq Pipeline Ellinor Lab
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
2
BEDTools
2
MACS2
2
STAR
2
Samtools
2
deepTools
2
fastp
1
BWA
1
Bowtie 2
1
ChromHMM
1
Picard
1
RSEM
1
SALMON
1
bedGraphToBigWig
Developed by
AMP-T2D consortium
2
Ines Cebola, Imperial College London
1
Kyle Gaulton, UCSD
1
Patrick T. Ellinor, Broad
lab.title!
AMP-T2D consortium
Showing 4 of 4 results
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Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
STAR, RSEM
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays:
RNA-seq
Software:
fastp, STAR, SALMON, Samtools, deepTools
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays:
ChIP-seq
Software:
BWA, Picard, MACS2, BEDTools, ChromHMM
Pipeline
DPL245EPK
active
ChIP-seq Pipeline Cebola Lab
Assays:
ChIP-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig