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Assay
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
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active
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2
BEDTools
2
MACS2
1
Association testing and fine mapping: eQTL-Catalogue/qtlmap
1
Bowtie 2
1
CoLo
1
Gene expression QC and normalisation: eQTL-Catalogue/qcnorm
1
Genotype QC and imputation: eQTL-Catalogue/genimpute
1
RNA-seq quantification: eQTL-Catalogue/rnaseq
1
SRA_Toolkit
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bedGraphToBigWig
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getVariantOverlap.py
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makeCandidateRegions.py
1
predict.py
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run.neighborhoods.py
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AMP-T2D consortium
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Pipeline
DPL010CNP
active
Activity by Contact
Assays:
ATAC-seq, ChIP-seq, DNase-seq
Software:
MACS2, BEDTools, makeCandidateRegions.py, run.neighborhoods.py, predict.py, getVariantOverlap.py