Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Assay
1
ChIP-seq
1
DNase-seq
1
RNA-seq
single cell isolation followed by RNA-seq
1
whole genome sequencing assay
Pipeline status
2
active
Pipeline groups
1
A short overview of the main analysis steps for eQTL Catalogue
Activity by Contact
1
ChIP-Atlas Pipeline
Software
1
Association testing and fine mapping: eQTL-Catalogue/qtlmap
1
BEDTools
1
Bowtie 2
1
CoLo
1
Gene expression QC and normalisation: eQTL-Catalogue/qcnorm
1
Genotype QC and imputation: eQTL-Catalogue/genimpute
1
MACS2
1
RNA-seq quantification: eQTL-Catalogue/rnaseq
1
SRA_Toolkit
1
Samtools
1
bedGraphToBigWig
1
unknown
Developed by
2
AMP-T2D consortium
assay_term_names!
single cell isolation followed by RNA-seq
title!
Activity by Contact
Showing 2 of 2 results
table-tab-icon
matrix-icon
Pipeline
DPL005RCG
active
A short overview of the main analysis steps for eQTL Catalogue
Assays:
RNA-seq, whole genome sequencing assay
Software:
RNA-seq quantification: eQTL-Catalogue/rnaseq, Gene expression QC and normalisation: eQTL-Catalogue/qcnorm, Genotype QC and imputation: eQTL-Catalogue/genimpute, Association testing and fine mapping: eQTL-Catalogue/qtlmap
Pipeline
DPL983WYV
active
ChIP-Atlas Pipeline
Assays:
ChIP-seq, DNase-seq
Software:
SRA_Toolkit, Bowtie 2, Samtools, BEDTools, bedGraphToBigWig, MACS2, unknown, CoLo