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Assay
2
ATAC-seq
1
RNA-seq
1
single cell isolation followed by RNA-seq
Pipeline status
5
active
Pipeline groups
1
ATAC-seq Pipeline Gaulton Lab
1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
scRNA-seq clustering for HPAP dataset
Software
2
BWA
2
MACS2
2
Picard
2
Samtools
1
BEDTools
1
RSEM
1
STAR
1
Trim Galore
Developed by
17
AMP-T2D consortium
5
Kyle Gaulton, UCSD
4
Ines Cebola, Imperial College London
Patrick T. Ellinor, Broad
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Patrick T. Ellinor, Broad
Showing 5 of 5 results
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Pipeline
DPL255HPT
active
scRNA-seq clustering for HPAP dataset
Pipeline
DPL066WNI
active
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
Assays:
single cell isolation followed by RNA-seq
Pipeline
DPL961ZQY
active
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
ATAC-seq
Software:
Trim Galore, BWA, Samtools, Picard, MACS2
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
RNA-seq
Software:
STAR, RSEM
Pipeline
DPL121OYY
active
ATAC-seq Pipeline Gaulton Lab
Assays:
ATAC-seq
Software:
BWA, Samtools, Picard, MACS2, BEDTools