Showing 5 of 5 results

• Pipeline

  DPL608JFY

  active

  TF ChIP-seq Pipeline 2 (ENCODE unreplicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed

• Pipeline

  DPL935TZE

  active

  TF ChIP-seq Pipeline 2 (ENCODE replicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, MACS2, BEDTools, Irreproducible Discovery Rate (IDR), Phantompeakqualtools, bedToBigBed

• Pipeline

  DPL721SCW

  active

  Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, Picard, cutadapt, ptools_bin, overlap_peaks.py, bedToBigBed, MACS2, BEDTools

• Pipeline

  DPL064PJG

  active

  Histone ChIP-seq Pipeline 2 (ENCODE replicated)

  Assays: ChIP-seq, Mint-ChIP-seq

  Software: Bowtie 2, Samtools, sambamba, cutadapt, Picard, ptools_bin, MACS2, BEDTools, overlap_peaks.py, bedToBigBed

• Pipeline

  DPL010CNP

  active

  Activity by Contact

  Assays: ATAC-seq, ChIP-seq, DNase-seq

  Software: MACS2, BEDTools, makeCandidateRegions.py, run.neighborhoods.py, predict.py, getVariantOverlap.py