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Showing 25 of 41 results
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Sheridan H Littleton, Khanh B Trang, Christina M Volpe, et al.
Cell Genomics. 2024-05-08;
Data summary: Hi-C, RNA-seq, ATAC-seq, single-nucleus RNA-seq, and single-nucleus ATAC-seq data have been…Data summary: Raw and processed Hi-C data GEO: GSE241592Data summary: Raw and processed RNA-seq data GEO: GSE241050Data summary: Raw and processed ATAC-seq data GEO: GSE241591Data summary: Raw and processed single-nucleus RNA-seq data GEO: GSE241594Data summary: Raw and processed single-nucleus ATAC-seq data GEO: GSE241593;Publication
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Fan Zhang, Anna Helena Jonsson, Aparna Nathan, et al.
Nature. 2023-11-08;623(7987):616-624.
Data summary: CITE-seq single-cell expression matrices and sequencing and bulk expression matrices are available…Data summary: Associated genotype and clinical data are available through the Arthritis and Autoimmune and…Data summary: A cell browser website is available to visualize our data and results.Data summary: AMP Phase 1 single-cell data from ref. 8 are available on Immport (SDY998). PEAC clinical trial…Data summary: The source code for the analyses is available at GitHubData summary: The source code for the analyses is available at zenodoPublication
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Linda Kachuri, Angel C. Y. Mak, Donglei Hu, et al.
Nat Genet. 2023-05-25;55(6):952-963.
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Ricardo D’Oliveira Albanus, Xuming Tang, Henry J. Taylor, et al.
bioRxiv. 2022-11-14;
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Charles A Herring, Rebecca K Simmons, Saskia Freytag, et al.
Cell. 2022-10-31;185(23):4428-4447.
Available supplemental data: websiteFile format: other formatData summary: Single-nuclei RNA-seq and single-nuclei ATAC-seq data have been deposited at GEO under accession…Available supplemental data: websiteData summary: Accompanying interactive browsers for this study are available at http://brain.listerlab.org.Available supplemental data: websiteData summary: All data for the Velmeshev et al. study is publicly available through the Sequence Read Archive,…Available supplemental data: websiteData summary: All original code has been deposited at Zenodo and is publicly available as of the date of…Available supplemental data: websiteData summary: Any additional information required to reanalyze the data reported in this work paper is available…Publication
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Ana Uzquiano, Amanda J Kedaigle, Martina Pigoni, et al.
Cell. 2022-09-29;185(20):3770-3788.e27.
Available supplemental data: websiteData summary: Read-level data from scRNA-seq, scATAC-seq, SHARE-seq, and Slide-seq data, supporting the findings…Available supplemental data: websiteData summary: The count-level data and meta-data have been deposited at the Single Cell Portal.Available supplemental data: websiteData summary: Supplemental data related to Figures 1, ,3,3, ,4,4, ,5,5, ,6,6, and and77 has been deposited…Available supplemental data: websiteData summary: Code used during data analysis is available at GitHub. d Any additional information required to…Available supplemental data: websiteData summary: Data from previous publications that was used in this study can be found at the Gene Expression…Publication
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Nils Briel, Viktoria C. Ruf, Katrin Pratsch, et al.
Acta Neuropathol. 2022-08-17;144(4):615–635.
Available supplemental data: websiteData summary: All scripts for pre-processing and analyzing the snATAC-seq data from PSP/CBD frontal cortex and…Publication
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Sebastian Preissl, Kyle J Gaulton, Bing Ren.
Nat Rev Genet. 2022-07-15;
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Hongbo Liu, Tomohito Doke, Dong Guo, et al.
Nature Genetics. 2022-06-16;54:950–962.
Available supplemental data: websiteData summary: Customized code used in the present study is available at githubPublication
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Chongyuan Luo, Hanqing Liu, Fangming Xie, et al.
Cell Genom. 2022-03-09;2(3):100107.
Available supplemental data: websiteData summary: Raw and processed data included in this study were deposited to NCBI GEO/SRA with accession number…Available supplemental data: websiteData summary: snmCAT-seq generated from brain tissues can be visualized at…Available supplemental data: websiteData summary: snRNA-seq data is available for download from the Neuroscience Multi-omics Archive…Available supplemental data: websiteData summary: The code for SingleCellFusion is available from https://github.com/mukamel-lab/SingleCellFusion.Available supplemental data: websiteData summary: The code benchmarking computational integration methods are available from…Available supplemental data: websiteData summary: The code reproducing the over- and under-splitting analysis are available from…Available supplemental data: websiteData summary: A detailed bench protocol for snmCAT-seq and future updates to the method can be found at…Publication
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Lorena Alonso, Anthony Piron, Ignasi Morán, et al.
Cell Rep. 2021-10-12;37(2):109807.
Data summary: RNA-seq and genotyping array data from PISA cohort Sequence data have been deposited at the…Publication
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Alexandro E Trevino, Fabian Müller, Jimena Andersen, et al.
Cell. 2021-09-16;184(19):5053-5069.
Available supplemental data: websiteData summary: Data used for the analyses presented in this work are available under GEO: GSE162170 and on a…Available supplemental data: websiteData summary: BPNet code can be found at GitHub.Available supplemental data: websiteData summary: A supplementary website with references to the data, code repositories and tools for interactive…Publication
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Arushi Varshney, Yasuhiro Kyono, Venkateswaran Ramamoorthi Elangovan, et al.
Diabetes. 2021-04-13;(db201087)
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Benjamin H. Mullin, Jennifer Tickner, Kun Zhu, et al.
Genome Biology. 2020-03-26;20(1):80.
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M Ryan Corces, Anna Shcherbina, Soumya Kundu, et al.
Nat Genet. 2020 Oct 26;52(11):1158-1168.
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Ruilin Tian, Mariam A Gachechiladze, Connor H Ludwig, et al.
Neuron. 2019-10-23;104(2):239-255.e12.
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Parker C Wilson, Haojia Wu, Yuhei Kirita, et al.
Proc Natl Acad Sci U S A. 2019-09-24;116(39):19619-19625.
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Thomas M Norman, Max A Horlbeck, Joseph M Replogle, et al.
Science. 2019-08-23;365(6455):786-793.
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Jason C Klein, Aidan Keith, Sarah J Rice, et al.
Nat Commun. 2019-06-04;10(1):2434.
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Fan Zhang#, Kevin Wei#, Kamil Slowikowski#, et al.
Nat Immunol. 2019-05-06;20(7):928-942.
Data summary: The single-cell RNA-seq data, bulk RNA-seq data, mass cytometry data, flow cytometry data, and the…Data summary: The raw single-cell RNA-seq data are deposited in dbGaP.Data summary: The source code repository of the computational and statistical analysis is located at…Data summary: Data can also be viewed on three different websites 1/3.Data summary: Data can also be viewed on three different websites 2/3.Data summary: Data can also be viewed on three different websites 3/3.Publication
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Adrian Veres, Aubrey L Faust, Henry L Bushnell, et al.
Nature. 2019-05-01;569(7756):368-373.
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Yongxu Zhao, Zhuanghui Feng, Yongxian Zhang, et al.
Cell Rep. 2019-01-22;26(4):884-892.e4.
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Cynthia A Kalita, Christopher D Brown, Andrew Freiman, et al.
Genome Res. 2018-09-25;28(11):1701-1708.
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Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, et al.
Cell Stem Cell. 2018-08-02;23(2):276-288.e8.
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Quanbo Ji, Yuxuan Zheng, Guoqiang Zhang, et al.
Ann Rheum Dis. 2018-07-19;78(1):100-110.