November 2022 Data Release
November 1, 2022 —
We are pleased to release following datasets:
- MPRA of MIN6
- MPRA to prioritize disease-associated variants for five autoimmune diseases
-
ChIP-seq binding sites from 161 TFs across 91 cell types from the ENCODE project
-
Bulk & single atac-seq data from following studies:
- Joint disease-specificity at the regulatory base-pair level
New tool to visuliaze single cell assays: ShinyCell
ShinyCell is a R package that allows users to create interactive Shiny-based web applications to visualise single-cell data via (i) visualising cell information and/or gene expression on reduced dimensions e.g. UMAP, (ii) visualising the coexpression of two genes on reduced dimensions, (iii) visualising the distribution of continuous cell information e.g. nUMI / module scores using violin plots / box plots, (iv) visualising the composition of different clusters / groups of cells using proportion plots and (v) visualising the expression of multiple genes using bubbleplots / heatmap.
All the single cell datasets in CMDGA can now be visualized on ShinyCell. Find on homepage, linkout to each data set on embedding page or under the Tools menu.
All data are free and accessible for use. Please refer to our Data Use Policy for any questions. For questions about Diabetes Epienome Atlas data, please contact us.