Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1669candidate regulatory elements
  • 1178target gene predictions
  • 977histone modifications
  • 939chromatin state
  • 839accessible chromatin
  • 811binding sites
  • 395gene expression
  • 161eQTL
  • 83variant allelic effects
  • 72Fine-mapped variants
  • 8caQTL
  • 5hQTL
  • 4sQTL
  • 3meQTL
  • 3other
  • 3pQTL
  • 2variant to gene
  • 1representative DNase hypersensitivity sites
Date released
  • 2590February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 333November, 2021
  • 289June, 2020
  • 155May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 89January, 2020
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 35August, 2017
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5517bed bed3+
  • 869bed bed9
  • 488bigWig
  • 462tsv
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 4bam
  • 4bigBed narrowPeak
  • 3bed gappedPeak
  • 3xls
Organism
  • 7106Homo sapiens
Biosample type
  • 2564tissue
  • 2173cell line
  • 1978primary cell
  • 434in vitro differentiated cells
  • 3stem cell
Organ
  • 669epithelium
  • 509kidney
  • 461brain
  • 420connective tissue
  • 358musculature of body
  • 309lung
  • 280intestine
  • 246heart
  • 243limb
  • 206pancreas
  • 205vasculature
  • 201skin of body
  • 189bodily fluid
  • 178blood
  • 169large intestine
  • 164embryo
  • 160blood vessel
  • 146extraembryonic component
  • 123liver
  • 115stomach
  • 89bone element
  • 87adipose tissue
  • 86mammary gland
  • 84eye
  • 84small intestine
  • 76prostate gland
  • 73placenta
  • 71adrenal gland
  • 67artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 43spinal cord
  • 41esophagus
  • 33spleen
  • 30uterus
  • 25nerve
  • 25testis
  • 22lymphoid tissue
  • 22ovary
  • 22vein
  • 21thyroid gland
  • 18mouth
  • 18skeleton
  • 16lymphatic vessel
  • 15bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 6738AMP
  • 333ENCODE
  • 58T1D
  • 19LungMap
  • 5community
Genome assembly (visualization)
  • 6626hg19
  • 1649GRCh38
  • 4hg18
BIOSAMPLE
TYPE

7153 results

search-icontable-tab-icon
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
gene expression
eQTL
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
meQTL
other
pQTL
variant to gene
representative DNase hypersensitivity sites
tissue
heart37201214132
stomach402111931
kidney291421691711
brain291631821121
lung3317161
cell line
A549211911812
MCF-7962513
K562771712
EndoC_BH1118181
breast cancer cell119
primary cell
monocyte286181154211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530143
B cell1310862
endothelial cell7114281
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616311
embryonic stem cell11561
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego