Experiment summary for TSTSR030656
- Status: released
Summary
- Assay
- single cell isolation followed by RNA-seq (single cell RNA-seq)
- Biosample summary
- Homo sapiens pancreatic alpha cell female adult (53 years) and female adult (56 years) and male adult (22 years) and male adult (29 years) and male adult (30 years)
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- GEO GSE86473 single cell RNA-seq of human pancreatic pancreatic alpha cell for ND individual
- Nucleic acid type
- RNA
- Library starting quantity
- 1cells
- Size range
- >200
- Strand specificity
- Non-strand-specific
- Platform
- Illumina NextSeq 500
Attribution
AMP Consortium
- Award
- U01DK100554 (T2D AMP Consortium)
- Project
- AMP
- External resources
- Aliases
- amp-t2d-consortium:GSE86473_scRNA_Alpha_ND
- Date released
- July 24, 2018
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 4 | pancreatic alpha primary cell male adult (22 years) | TSTBS051650 | TSTLB652613 |
| 1 | 8 | pancreatic alpha primary cell male adult (22 years) | TSTBS043075 | TSTLB736977 |
| 1 | 16 | pancreatic alpha primary cell male adult (22 years) | TSTBS789380 | TSTLB056712 |
| 1 | 22 | pancreatic alpha primary cell male adult (22 years) | TSTBS894172 | TSTLB685418 |
| 1 | 28 | pancreatic alpha primary cell male adult (22 years) | TSTBS166666 | TSTLB355124 |
| 1 | 31 | pancreatic alpha primary cell male adult (22 years) | TSTBS025819 | TSTLB257409 |
| 1 | 39 | pancreatic alpha primary cell male adult (22 years) | TSTBS881341 | TSTLB621561 |
| 1 | 5 | pancreatic alpha primary cell male adult (22 years) | TSTBS232625 | TSTLB496048 |
| 1 | 9 | pancreatic alpha primary cell male adult (22 years) | TSTBS637123 | TSTLB423877 |
| 1 | 26 | pancreatic alpha primary cell male adult (22 years) | TSTBS714942 | TSTLB911671 |
| 1 | 1 | pancreatic alpha primary cell male adult (22 years) | TSTBS576263 | TSTLB219958 |
| 1 | 6 | pancreatic alpha primary cell male adult (22 years) | TSTBS561560 | TSTLB863840 |
| 1 | 14 | pancreatic alpha primary cell male adult (22 years) | TSTBS145172 | TSTLB858967 |
| 1 | 27 | pancreatic alpha primary cell male adult (22 years) | TSTBS885772 | TSTLB103298 |
| 1 | 30 | pancreatic alpha primary cell male adult (22 years) | TSTBS667080 | TSTLB352473 |
| 1 | 37 | pancreatic alpha primary cell male adult (22 years) | TSTBS095415 | TSTLB960366 |
| 1 | 43 | pancreatic alpha primary cell male adult (22 years) | TSTBS952745 | TSTLB352213 |
| 1 | 50 | pancreatic alpha primary cell male adult (22 years) | TSTBS874004 | TSTLB295288 |
| 1 | 2 | pancreatic alpha primary cell male adult (22 years) | TSTBS456207 | TSTLB317451 |
| 1 | 10 | pancreatic alpha primary cell male adult (22 years) | TSTBS676474 | TSTLB952677 |
| 1 | 13 | pancreatic alpha primary cell male adult (22 years) | TSTBS089039 | TSTLB086641 |
| 1 | 19 | pancreatic alpha primary cell male adult (22 years) | TSTBS693138 | TSTLB259190 |
| 1 | 25 | pancreatic alpha primary cell male adult (22 years) | TSTBS099241 | TSTLB731059 |
| 1 | 29 | pancreatic alpha primary cell male adult (22 years) | TSTBS810697 | TSTLB711497 |
| 1 | 32 | pancreatic alpha primary cell male adult (22 years) | TSTBS936455 | TSTLB712421 |
| 1 | 41 | pancreatic alpha primary cell male adult (22 years) | TSTBS519881 | TSTLB886694 |
| 1 | 48 | pancreatic alpha primary cell male adult (22 years) | TSTBS984667 | TSTLB989732 |
| 1 | 54 | pancreatic alpha primary cell male adult (22 years) | TSTBS094059 | TSTLB943559 |
| 1 | 60 | pancreatic alpha primary cell male adult (22 years) | TSTBS153319 | TSTLB507484 |
| 1 | 67 | pancreatic alpha primary cell male adult (22 years) | TSTBS939692 | TSTLB731350 |
| 2 | 9 | pancreatic alpha primary cell female adult (53 years) | TSTBS155845 | TSTLB703840 |
| 3 | 1 | pancreatic alpha primary cell male adult (29 years) | TSTBS770603 | TSTLB632790 |
| 3 | 10 | pancreatic alpha primary cell male adult (29 years) | TSTBS590963 | TSTLB923260 |
| 4 | 3 | pancreatic alpha primary cell male adult (30 years) | TSTBS882948 | TSTLB355017 |
| 4 | 9 | pancreatic alpha primary cell male adult (30 years) | TSTBS136112 | TSTLB638270 |
| 4 | 12 | pancreatic alpha primary cell male adult (30 years) | TSTBS716908 | TSTLB759170 |
| 5 | 2 | pancreatic alpha primary cell female adult (56 years) | TSTBS576661 | TSTLB912746 |
| 5 | 11 | pancreatic alpha primary cell female adult (56 years) | TSTBS505774 | TSTLB404360 |
| 5 | 13 | pancreatic alpha primary cell female adult (56 years) | TSTBS689749 | TSTLB773516 |
| 5 | 20 | pancreatic alpha primary cell female adult (56 years) | TSTBS946395 | TSTLB412243 |
| 5 | 22 | pancreatic alpha primary cell female adult (56 years) | TSTBS341124 | TSTLB379761 |
| 1 | 3 | pancreatic alpha primary cell male adult (22 years) | TSTBS834223 | TSTLB357029 |
| 1 | 7 | pancreatic alpha primary cell male adult (22 years) | TSTBS333920 | TSTLB490550 |
| 1 | 12 | pancreatic alpha primary cell male adult (22 years) | TSTBS456728 | TSTLB924901 |
| 1 | 17 | pancreatic alpha primary cell male adult (22 years) | TSTBS431474 | TSTLB337029 |
| 1 | 20 | pancreatic alpha primary cell male adult (22 years) | TSTBS699469 | TSTLB520835 |
| 1 | 23 | pancreatic alpha primary cell male adult (22 years) | TSTBS095124 | TSTLB473640 |
| 1 | 34 | pancreatic alpha primary cell male adult (22 years) | TSTBS965663 | TSTLB417289 |
| 1 | 36 | pancreatic alpha primary cell male adult (22 years) | TSTBS553373 | TSTLB666499 |
| 1 | 40 | pancreatic alpha primary cell male adult (22 years) | TSTBS341981 | TSTLB494839 |
| 1 | 47 | pancreatic alpha primary cell male adult (22 years) | TSTBS564155 | TSTLB980676 |
| 1 | 53 | pancreatic alpha primary cell male adult (22 years) | TSTBS402098 | TSTLB630844 |
| 1 | 55 | pancreatic alpha primary cell male adult (22 years) | TSTBS912492 | TSTLB610253 |
| 1 | 61 | pancreatic alpha primary cell male adult (22 years) | TSTBS463289 | TSTLB710773 |
| 1 | 63 | pancreatic alpha primary cell male adult (22 years) | TSTBS669434 | TSTLB668582 |
| 2 | 2 | pancreatic alpha primary cell female adult (53 years) | TSTBS889232 | TSTLB685029 |
| 2 | 4 | pancreatic alpha primary cell female adult (53 years) | TSTBS376342 | TSTLB528942 |
| 3 | 2 | pancreatic alpha primary cell male adult (29 years) | TSTBS943066 | TSTLB080409 |
| 3 | 9 | pancreatic alpha primary cell male adult (29 years) | TSTBS388136 | TSTLB891490 |
| 3 | 11 | pancreatic alpha primary cell male adult (29 years) | TSTBS498339 | TSTLB063750 |
| 4 | 1 | pancreatic alpha primary cell male adult (30 years) | TSTBS576064 | TSTLB023191 |
| 4 | 8 | pancreatic alpha primary cell male adult (30 years) | TSTBS872870 | TSTLB674371 |
| 4 | 10 | pancreatic alpha primary cell male adult (30 years) | TSTBS203320 | TSTLB118927 |
| 4 | 14 | pancreatic alpha primary cell male adult (30 years) | TSTBS629882 | TSTLB318175 |
| 4 | 18 | pancreatic alpha primary cell male adult (30 years) | TSTBS869104 | TSTLB779049 |
| 5 | 4 | pancreatic alpha primary cell female adult (56 years) | TSTBS119415 | TSTLB095114 |
| 5 | 14 | pancreatic alpha primary cell female adult (56 years) | TSTBS907460 | TSTLB439972 |
| 5 | 16 | pancreatic alpha primary cell female adult (56 years) | TSTBS851894 | TSTLB240138 |
| 1 | 11 | pancreatic alpha primary cell male adult (22 years) | TSTBS332850 | TSTLB172354 |
| 1 | 15 | pancreatic alpha primary cell male adult (22 years) | TSTBS916239 | TSTLB565059 |
| 1 | 18 | pancreatic alpha primary cell male adult (22 years) | TSTBS183303 | TSTLB558878 |
| 1 | 21 | pancreatic alpha primary cell male adult (22 years) | TSTBS927526 | TSTLB567217 |
| 1 | 24 | pancreatic alpha primary cell male adult (22 years) | TSTBS491001 | TSTLB770816 |
| 1 | 35 | pancreatic alpha primary cell male adult (22 years) | TSTBS368111 | TSTLB886661 |
| 1 | 38 | pancreatic alpha primary cell male adult (22 years) | TSTBS356365 | TSTLB998713 |
| 1 | 44 | pancreatic alpha primary cell male adult (22 years) | TSTBS358207 | TSTLB497928 |
| 1 | 46 | pancreatic alpha primary cell male adult (22 years) | TSTBS177181 | TSTLB080237 |
| 1 | 52 | pancreatic alpha primary cell male adult (22 years) | TSTBS256257 | TSTLB874746 |
| 1 | 59 | pancreatic alpha primary cell male adult (22 years) | TSTBS820104 | TSTLB200579 |
| 1 | 66 | pancreatic alpha primary cell male adult (22 years) | TSTBS720823 | TSTLB073069 |
| 1 | 68 | pancreatic alpha primary cell male adult (22 years) | TSTBS345852 | TSTLB360867 |
| 2 | 10 | pancreatic alpha primary cell female adult (53 years) | TSTBS151000 | TSTLB708157 |
| 3 | 12 | pancreatic alpha primary cell male adult (29 years) | TSTBS808074 | TSTLB461948 |
| 3 | 14 | pancreatic alpha primary cell male adult (29 years) | TSTBS100954 | TSTLB200097 |
| 3 | 17 | pancreatic alpha primary cell male adult (29 years) | TSTBS253746 | TSTLB503967 |
| 4 | 7 | pancreatic alpha primary cell male adult (30 years) | TSTBS856646 | TSTLB254314 |
| 4 | 16 | pancreatic alpha primary cell male adult (30 years) | TSTBS794462 | TSTLB261910 |
| 5 | 1 | pancreatic alpha primary cell female adult (56 years) | TSTBS421373 | TSTLB142982 |
| 5 | 9 | pancreatic alpha primary cell female adult (56 years) | TSTBS285702 | TSTLB986678 |
| 5 | 17 | pancreatic alpha primary cell female adult (56 years) | TSTBS513083 | TSTLB013757 |
| 1 | 33 | pancreatic alpha primary cell male adult (22 years) | TSTBS459864 | TSTLB848592 |
| 1 | 42 | pancreatic alpha primary cell male adult (22 years) | TSTBS784873 | TSTLB782125 |
| 1 | 49 | pancreatic alpha primary cell male adult (22 years) | TSTBS870978 | TSTLB932257 |
| 1 | 56 | pancreatic alpha primary cell male adult (22 years) | TSTBS979559 | TSTLB046423 |
| 1 | 62 | pancreatic alpha primary cell male adult (22 years) | TSTBS913656 | TSTLB893072 |
| 2 | 1 | pancreatic alpha primary cell female adult (53 years) | TSTBS876785 | TSTLB708801 |
| 2 | 3 | pancreatic alpha primary cell female adult (53 years) | TSTBS429260 | TSTLB790009 |
| 2 | 6 | pancreatic alpha primary cell female adult (53 years) | TSTBS488836 | TSTLB632127 |
| 3 | 3 | pancreatic alpha primary cell male adult (29 years) | TSTBS207249 | TSTLB276444 |
| 3 | 5 | pancreatic alpha primary cell male adult (29 years) | TSTBS717953 | TSTLB053740 |
| 3 | 7 | pancreatic alpha primary cell male adult (29 years) | TSTBS106225 | TSTLB138591 |
| 3 | 15 | pancreatic alpha primary cell male adult (29 years) | TSTBS915686 | TSTLB948220 |
| 4 | 5 | pancreatic alpha primary cell male adult (30 years) | TSTBS733475 | TSTLB492282 |
| 4 | 13 | pancreatic alpha primary cell male adult (30 years) | TSTBS396271 | TSTLB501488 |
| 5 | 3 | pancreatic alpha primary cell female adult (56 years) | TSTBS221602 | TSTLB739854 |
| 5 | 12 | pancreatic alpha primary cell female adult (56 years) | TSTBS973920 | TSTLB970963 |
| 5 | 19 | pancreatic alpha primary cell female adult (56 years) | TSTBS772921 | TSTLB286732 |
| 1 | 45 | pancreatic alpha primary cell male adult (22 years) | TSTBS872901 | TSTLB801755 |
| 1 | 51 | pancreatic alpha primary cell male adult (22 years) | TSTBS729227 | TSTLB187454 |
| 1 | 58 | pancreatic alpha primary cell male adult (22 years) | TSTBS597640 | TSTLB128054 |
| 1 | 65 | pancreatic alpha primary cell male adult (22 years) | TSTBS062062 | TSTLB153453 |
| 2 | 7 | pancreatic alpha primary cell female adult (53 years) | TSTBS891639 | TSTLB639859 |
| 3 | 4 | pancreatic alpha primary cell male adult (29 years) | TSTBS938012 | TSTLB881193 |
| 3 | 8 | pancreatic alpha primary cell male adult (29 years) | TSTBS563823 | TSTLB350433 |
| 3 | 16 | pancreatic alpha primary cell male adult (29 years) | TSTBS707212 | TSTLB896074 |
| 4 | 6 | pancreatic alpha primary cell male adult (30 years) | TSTBS831503 | TSTLB441247 |
| 4 | 15 | pancreatic alpha primary cell male adult (30 years) | TSTBS677422 | TSTLB319786 |
| 4 | 19 | pancreatic alpha primary cell male adult (30 years) | TSTBS840332 | TSTLB965243 |
| 5 | 5 | pancreatic alpha primary cell female adult (56 years) | TSTBS411211 | TSTLB181493 |
| 5 | 7 | pancreatic alpha primary cell female adult (56 years) | TSTBS790708 | TSTLB274703 |
| 5 | 15 | pancreatic alpha primary cell female adult (56 years) | TSTBS006685 | TSTLB828648 |
| 5 | 21 | pancreatic alpha primary cell female adult (56 years) | TSTBS928077 | TSTLB869349 |
| 1 | 57 | pancreatic alpha primary cell male adult (22 years) | TSTBS424710 | TSTLB126640 |
| 1 | 64 | pancreatic alpha primary cell male adult (22 years) | TSTBS287369 | TSTLB128313 |
| 2 | 5 | pancreatic alpha primary cell female adult (53 years) | TSTBS557028 | TSTLB666787 |
| 2 | 8 | pancreatic alpha primary cell female adult (53 years) | TSTBS023811 | TSTLB803031 |
| 3 | 6 | pancreatic alpha primary cell male adult (29 years) | TSTBS939494 | TSTLB623100 |
| 3 | 13 | pancreatic alpha primary cell male adult (29 years) | TSTBS350583 | TSTLB310294 |
| 3 | 18 | pancreatic alpha primary cell male adult (29 years) | TSTBS705681 | TSTLB485546 |
| 4 | 2 | pancreatic alpha primary cell male adult (30 years) | TSTBS933444 | TSTLB363419 |
| 4 | 4 | pancreatic alpha primary cell male adult (30 years) | TSTBS013854 | TSTLB815460 |
| 4 | 11 | pancreatic alpha primary cell male adult (30 years) | TSTBS052609 | TSTLB314112 |
| 4 | 17 | pancreatic alpha primary cell male adult (30 years) | TSTBS322902 | TSTLB855182 |
| 4 | 20 | pancreatic alpha primary cell male adult (30 years) | TSTBS819477 | TSTLB222404 |
| 5 | 6 | pancreatic alpha primary cell female adult (56 years) | TSTBS866064 | TSTLB709033 |
| 5 | 8 | pancreatic alpha primary cell female adult (56 years) | TSTBS624259 | TSTLB557451 |
| 5 | 10 | pancreatic alpha primary cell female adult (56 years) | TSTBS475649 | TSTLB898349 |
| 5 | 18 | pancreatic alpha primary cell female adult (56 years) | TSTBS425804 | TSTLB706605 |