Experiment summary for TSTSR291646
- Status: released
Summary
- Assay
- single cell isolation followed by RNA-seq (single cell RNA-seq)
- Biosample summary
- Homo sapiens pancreatic beta cell female adult (53 years) and female adult (56 years) and male adult (22 years) and male adult (29 years) and male adult (30 years)
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- GEO GSE86473 single cell RNA-seq of human pancreatic pancreatic beta cell for ND individual
- Nucleic acid type
- RNA
- Library starting quantity
- 1cells
- Size range
- >200
- Strand specificity
- Non-strand-specific
- Platform
- Illumina NextSeq 500
Attribution
AMP Consortium
- Award
- U01DK100554 (T2D AMP Consortium)
- Project
- AMP
- External resources
- Aliases
- amp-t2d-consortium:GSE86473_scRNA_Beta_ND
- Date released
- July 24, 2018
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 3 | pancreatic beta primary cell male adult (22 years) | TSTBS516530 | TSTLB684802 |
| 1 | 9 | pancreatic beta primary cell male adult (22 years) | TSTBS029594 | TSTLB184739 |
| 1 | 17 | pancreatic beta primary cell male adult (22 years) | TSTBS008454 | TSTLB576213 |
| 1 | 20 | pancreatic beta primary cell male adult (22 years) | TSTBS703374 | TSTLB046159 |
| 1 | 23 | pancreatic beta primary cell male adult (22 years) | TSTBS146833 | TSTLB905370 |
| 1 | 1 | pancreatic beta primary cell male adult (22 years) | TSTBS285644 | TSTLB720363 |
| 1 | 8 | pancreatic beta primary cell male adult (22 years) | TSTBS699370 | TSTLB230160 |
| 1 | 16 | pancreatic beta primary cell male adult (22 years) | TSTBS650488 | TSTLB357000 |
| 1 | 29 | pancreatic beta primary cell male adult (22 years) | TSTBS374003 | TSTLB407104 |
| 1 | 32 | pancreatic beta primary cell male adult (22 years) | TSTBS761375 | TSTLB836819 |
| 1 | 39 | pancreatic beta primary cell male adult (22 years) | TSTBS092512 | TSTLB392159 |
| 1 | 47 | pancreatic beta primary cell male adult (22 years) | TSTBS988228 | TSTLB225704 |
| 2 | 9 | pancreatic beta primary cell female adult (53 years) | TSTBS618267 | TSTLB483370 |
| 3 | 8 | pancreatic beta primary cell male adult (29 years) | TSTBS196412 | TSTLB165067 |
| 3 | 10 | pancreatic beta primary cell male adult (29 years) | TSTBS237615 | TSTLB485368 |
| 3 | 18 | pancreatic beta primary cell male adult (29 years) | TSTBS596229 | TSTLB224912 |
| 3 | 20 | pancreatic beta primary cell male adult (29 years) | TSTBS278053 | TSTLB558809 |
| 3 | 28 | pancreatic beta primary cell male adult (29 years) | TSTBS327446 | TSTLB461404 |
| 3 | 41 | pancreatic beta primary cell male adult (29 years) | TSTBS220860 | TSTLB121109 |
| 3 | 48 | pancreatic beta primary cell male adult (29 years) | TSTBS864575 | TSTLB542735 |
| 3 | 55 | pancreatic beta primary cell male adult (29 years) | TSTBS567950 | TSTLB500635 |
| 3 | 62 | pancreatic beta primary cell male adult (29 years) | TSTBS175291 | TSTLB528303 |
| 3 | 68 | pancreatic beta primary cell male adult (29 years) | TSTBS170152 | TSTLB042616 |
| 4 | 3 | pancreatic beta primary cell male adult (30 years) | TSTBS003541 | TSTLB663344 |
| 4 | 11 | pancreatic beta primary cell male adult (30 years) | TSTBS984321 | TSTLB509776 |
| 5 | 6 | pancreatic beta primary cell female adult (56 years) | TSTBS828532 | TSTLB921950 |
| 1 | 2 | pancreatic beta primary cell male adult (22 years) | TSTBS197248 | TSTLB232942 |
| 1 | 4 | pancreatic beta primary cell male adult (22 years) | TSTBS015998 | TSTLB669443 |
| 1 | 10 | pancreatic beta primary cell male adult (22 years) | TSTBS839260 | TSTLB286715 |
| 1 | 19 | pancreatic beta primary cell male adult (22 years) | TSTBS042557 | TSTLB681517 |
| 1 | 22 | pancreatic beta primary cell male adult (22 years) | TSTBS548617 | TSTLB021667 |
| 1 | 25 | pancreatic beta primary cell male adult (22 years) | TSTBS653646 | TSTLB666470 |
| 1 | 27 | pancreatic beta primary cell male adult (22 years) | TSTBS258560 | TSTLB545756 |
| 1 | 35 | pancreatic beta primary cell male adult (22 years) | TSTBS569653 | TSTLB058219 |
| 1 | 48 | pancreatic beta primary cell male adult (22 years) | TSTBS734315 | TSTLB787470 |
| 1 | 50 | pancreatic beta primary cell male adult (22 years) | TSTBS530728 | TSTLB393149 |
| 2 | 2 | pancreatic beta primary cell female adult (53 years) | TSTBS597825 | TSTLB723040 |
| 2 | 5 | pancreatic beta primary cell female adult (53 years) | TSTBS246136 | TSTLB176883 |
| 3 | 4 | pancreatic beta primary cell male adult (29 years) | TSTBS702686 | TSTLB590838 |
| 3 | 11 | pancreatic beta primary cell male adult (29 years) | TSTBS346232 | TSTLB674277 |
| 3 | 19 | pancreatic beta primary cell male adult (29 years) | TSTBS003769 | TSTLB185157 |
| 3 | 26 | pancreatic beta primary cell male adult (29 years) | TSTBS348287 | TSTLB256717 |
| 3 | 33 | pancreatic beta primary cell male adult (29 years) | TSTBS031107 | TSTLB574456 |
| 3 | 36 | pancreatic beta primary cell male adult (29 years) | TSTBS676427 | TSTLB691399 |
| 3 | 38 | pancreatic beta primary cell male adult (29 years) | TSTBS095383 | TSTLB256806 |
| 3 | 45 | pancreatic beta primary cell male adult (29 years) | TSTBS028642 | TSTLB472387 |
| 3 | 51 | pancreatic beta primary cell male adult (29 years) | TSTBS769209 | TSTLB042787 |
| 3 | 57 | pancreatic beta primary cell male adult (29 years) | TSTBS887282 | TSTLB761545 |
| 3 | 59 | pancreatic beta primary cell male adult (29 years) | TSTBS159269 | TSTLB913311 |
| 3 | 61 | pancreatic beta primary cell male adult (29 years) | TSTBS890443 | TSTLB743615 |
| 3 | 63 | pancreatic beta primary cell male adult (29 years) | TSTBS669390 | TSTLB191958 |
| 3 | 69 | pancreatic beta primary cell male adult (29 years) | TSTBS731547 | TSTLB978644 |
| 4 | 4 | pancreatic beta primary cell male adult (30 years) | TSTBS032908 | TSTLB288582 |
| 4 | 12 | pancreatic beta primary cell male adult (30 years) | TSTBS355410 | TSTLB651122 |
| 1 | 5 | pancreatic beta primary cell male adult (22 years) | TSTBS308769 | TSTLB674641 |
| 1 | 11 | pancreatic beta primary cell male adult (22 years) | TSTBS785486 | TSTLB895429 |
| 1 | 13 | pancreatic beta primary cell male adult (22 years) | TSTBS820609 | TSTLB979500 |
| 1 | 21 | pancreatic beta primary cell male adult (22 years) | TSTBS112701 | TSTLB277085 |
| 1 | 24 | pancreatic beta primary cell male adult (22 years) | TSTBS602907 | TSTLB821183 |
| 1 | 33 | pancreatic beta primary cell male adult (22 years) | TSTBS315494 | TSTLB507017 |
| 1 | 38 | pancreatic beta primary cell male adult (22 years) | TSTBS427931 | TSTLB245822 |
| 1 | 40 | pancreatic beta primary cell male adult (22 years) | TSTBS733381 | TSTLB918165 |
| 2 | 4 | pancreatic beta primary cell female adult (53 years) | TSTBS623720 | TSTLB020681 |
| 2 | 6 | pancreatic beta primary cell female adult (53 years) | TSTBS768678 | TSTLB528470 |
| 3 | 3 | pancreatic beta primary cell male adult (29 years) | TSTBS224457 | TSTLB403628 |
| 3 | 5 | pancreatic beta primary cell male adult (29 years) | TSTBS543368 | TSTLB597228 |
| 3 | 13 | pancreatic beta primary cell male adult (29 years) | TSTBS310767 | TSTLB671689 |
| 3 | 15 | pancreatic beta primary cell male adult (29 years) | TSTBS617560 | TSTLB618910 |
| 3 | 17 | pancreatic beta primary cell male adult (29 years) | TSTBS334321 | TSTLB519186 |
| 3 | 25 | pancreatic beta primary cell male adult (29 years) | TSTBS920810 | TSTLB708204 |
| 3 | 27 | pancreatic beta primary cell male adult (29 years) | TSTBS632812 | TSTLB884138 |
| 3 | 35 | pancreatic beta primary cell male adult (29 years) | TSTBS373304 | TSTLB829839 |
| 3 | 43 | pancreatic beta primary cell male adult (29 years) | TSTBS082088 | TSTLB733889 |
| 3 | 50 | pancreatic beta primary cell male adult (29 years) | TSTBS865163 | TSTLB389722 |
| 3 | 53 | pancreatic beta primary cell male adult (29 years) | TSTBS440693 | TSTLB537360 |
| 3 | 65 | pancreatic beta primary cell male adult (29 years) | TSTBS799595 | TSTLB683676 |
| 3 | 71 | pancreatic beta primary cell male adult (29 years) | TSTBS512891 | TSTLB218356 |
| 4 | 6 | pancreatic beta primary cell male adult (30 years) | TSTBS328890 | TSTLB555323 |
| 5 | 1 | pancreatic beta primary cell female adult (56 years) | TSTBS627856 | TSTLB070807 |
| 5 | 7 | pancreatic beta primary cell female adult (56 years) | TSTBS048123 | TSTLB613155 |
| 5 | 13 | pancreatic beta primary cell female adult (56 years) | TSTBS436224 | TSTLB234585 |
| 5 | 21 | pancreatic beta primary cell female adult (56 years) | TSTBS534453 | TSTLB907835 |
| 1 | 6 | pancreatic beta primary cell male adult (22 years) | TSTBS667640 | TSTLB665715 |
| 1 | 12 | pancreatic beta primary cell male adult (22 years) | TSTBS143937 | TSTLB248176 |
| 1 | 15 | pancreatic beta primary cell male adult (22 years) | TSTBS495613 | TSTLB331270 |
| 1 | 18 | pancreatic beta primary cell male adult (22 years) | TSTBS002280 | TSTLB291537 |
| 1 | 31 | pancreatic beta primary cell male adult (22 years) | TSTBS111547 | TSTLB918291 |
| 1 | 36 | pancreatic beta primary cell male adult (22 years) | TSTBS880606 | TSTLB125148 |
| 1 | 42 | pancreatic beta primary cell male adult (22 years) | TSTBS590838 | TSTLB941344 |
| 1 | 44 | pancreatic beta primary cell male adult (22 years) | TSTBS627507 | TSTLB006800 |
| 1 | 46 | pancreatic beta primary cell male adult (22 years) | TSTBS579092 | TSTLB695410 |
| 1 | 49 | pancreatic beta primary cell male adult (22 years) | TSTBS739549 | TSTLB709884 |
| 2 | 1 | pancreatic beta primary cell female adult (53 years) | TSTBS582181 | TSTLB354712 |
| 2 | 8 | pancreatic beta primary cell female adult (53 years) | TSTBS795311 | TSTLB858968 |
| 2 | 10 | pancreatic beta primary cell female adult (53 years) | TSTBS773832 | TSTLB678316 |
| 3 | 2 | pancreatic beta primary cell male adult (29 years) | TSTBS845915 | TSTLB687194 |
| 3 | 6 | pancreatic beta primary cell male adult (29 years) | TSTBS750641 | TSTLB436527 |
| 3 | 14 | pancreatic beta primary cell male adult (29 years) | TSTBS969880 | TSTLB949877 |
| 3 | 22 | pancreatic beta primary cell male adult (29 years) | TSTBS538351 | TSTLB609438 |
| 3 | 29 | pancreatic beta primary cell male adult (29 years) | TSTBS875022 | TSTLB102945 |
| 3 | 40 | pancreatic beta primary cell male adult (29 years) | TSTBS146256 | TSTLB201963 |
| 3 | 42 | pancreatic beta primary cell male adult (29 years) | TSTBS449131 | TSTLB168024 |
| 3 | 49 | pancreatic beta primary cell male adult (29 years) | TSTBS886368 | TSTLB107444 |
| 3 | 54 | pancreatic beta primary cell male adult (29 years) | TSTBS721739 | TSTLB293041 |
| 3 | 64 | pancreatic beta primary cell male adult (29 years) | TSTBS387049 | TSTLB130754 |
| 3 | 70 | pancreatic beta primary cell male adult (29 years) | TSTBS340047 | TSTLB119893 |
| 4 | 5 | pancreatic beta primary cell male adult (30 years) | TSTBS733306 | TSTLB266999 |
| 4 | 7 | pancreatic beta primary cell male adult (30 years) | TSTBS658799 | TSTLB463000 |
| 5 | 3 | pancreatic beta primary cell female adult (56 years) | TSTBS841584 | TSTLB462195 |
| 5 | 9 | pancreatic beta primary cell female adult (56 years) | TSTBS950888 | TSTLB329477 |
| 5 | 15 | pancreatic beta primary cell female adult (56 years) | TSTBS537212 | TSTLB695008 |
| 5 | 22 | pancreatic beta primary cell female adult (56 years) | TSTBS000212 | TSTLB962116 |
| 5 | 25 | pancreatic beta primary cell female adult (56 years) | TSTBS898734 | TSTLB072459 |
| 1 | 7 | pancreatic beta primary cell male adult (22 years) | TSTBS120796 | TSTLB584986 |
| 1 | 14 | pancreatic beta primary cell male adult (22 years) | TSTBS546224 | TSTLB186293 |
| 1 | 26 | pancreatic beta primary cell male adult (22 years) | TSTBS310111 | TSTLB643498 |
| 1 | 30 | pancreatic beta primary cell male adult (22 years) | TSTBS244794 | TSTLB182657 |
| 1 | 34 | pancreatic beta primary cell male adult (22 years) | TSTBS677124 | TSTLB349436 |
| 1 | 45 | pancreatic beta primary cell male adult (22 years) | TSTBS038249 | TSTLB271506 |
| 2 | 3 | pancreatic beta primary cell female adult (53 years) | TSTBS738961 | TSTLB725091 |
| 2 | 7 | pancreatic beta primary cell female adult (53 years) | TSTBS842013 | TSTLB663169 |
| 3 | 1 | pancreatic beta primary cell male adult (29 years) | TSTBS391691 | TSTLB896202 |
| 3 | 7 | pancreatic beta primary cell male adult (29 years) | TSTBS827879 | TSTLB629834 |
| 3 | 16 | pancreatic beta primary cell male adult (29 years) | TSTBS673059 | TSTLB032620 |
| 3 | 24 | pancreatic beta primary cell male adult (29 years) | TSTBS501104 | TSTLB250732 |
| 3 | 31 | pancreatic beta primary cell male adult (29 years) | TSTBS287250 | TSTLB021771 |
| 3 | 39 | pancreatic beta primary cell male adult (29 years) | TSTBS763469 | TSTLB890816 |
| 3 | 47 | pancreatic beta primary cell male adult (29 years) | TSTBS070178 | TSTLB228472 |
| 3 | 56 | pancreatic beta primary cell male adult (29 years) | TSTBS356085 | TSTLB034313 |
| 3 | 60 | pancreatic beta primary cell male adult (29 years) | TSTBS144129 | TSTLB911847 |
| 3 | 67 | pancreatic beta primary cell male adult (29 years) | TSTBS566583 | TSTLB808015 |
| 4 | 2 | pancreatic beta primary cell male adult (30 years) | TSTBS794815 | TSTLB930374 |
| 4 | 9 | pancreatic beta primary cell male adult (30 years) | TSTBS818150 | TSTLB441648 |
| 5 | 4 | pancreatic beta primary cell female adult (56 years) | TSTBS657509 | TSTLB749833 |
| 5 | 10 | pancreatic beta primary cell female adult (56 years) | TSTBS029913 | TSTLB927071 |
| 5 | 17 | pancreatic beta primary cell female adult (56 years) | TSTBS793346 | TSTLB118108 |
| 5 | 19 | pancreatic beta primary cell female adult (56 years) | TSTBS444668 | TSTLB746481 |
| 1 | 28 | pancreatic beta primary cell male adult (22 years) | TSTBS024111 | TSTLB201912 |
| 1 | 37 | pancreatic beta primary cell male adult (22 years) | TSTBS693695 | TSTLB011700 |
| 1 | 41 | pancreatic beta primary cell male adult (22 years) | TSTBS959382 | TSTLB251881 |
| 1 | 43 | pancreatic beta primary cell male adult (22 years) | TSTBS636648 | TSTLB098395 |
| 3 | 9 | pancreatic beta primary cell male adult (29 years) | TSTBS898816 | TSTLB771009 |
| 3 | 12 | pancreatic beta primary cell male adult (29 years) | TSTBS934802 | TSTLB946890 |
| 3 | 21 | pancreatic beta primary cell male adult (29 years) | TSTBS665270 | TSTLB951743 |
| 3 | 23 | pancreatic beta primary cell male adult (29 years) | TSTBS322366 | TSTLB751474 |
| 3 | 30 | pancreatic beta primary cell male adult (29 years) | TSTBS065550 | TSTLB876940 |
| 3 | 32 | pancreatic beta primary cell male adult (29 years) | TSTBS859771 | TSTLB127512 |
| 3 | 34 | pancreatic beta primary cell male adult (29 years) | TSTBS698656 | TSTLB249022 |
| 3 | 37 | pancreatic beta primary cell male adult (29 years) | TSTBS471981 | TSTLB792892 |
| 3 | 44 | pancreatic beta primary cell male adult (29 years) | TSTBS689068 | TSTLB859236 |
| 3 | 46 | pancreatic beta primary cell male adult (29 years) | TSTBS953729 | TSTLB454689 |
| 3 | 52 | pancreatic beta primary cell male adult (29 years) | TSTBS024598 | TSTLB498828 |
| 3 | 58 | pancreatic beta primary cell male adult (29 years) | TSTBS477958 | TSTLB884232 |
| 3 | 66 | pancreatic beta primary cell male adult (29 years) | TSTBS081362 | TSTLB023036 |
| 4 | 1 | pancreatic beta primary cell male adult (30 years) | TSTBS583035 | TSTLB277367 |
| 4 | 8 | pancreatic beta primary cell male adult (30 years) | TSTBS400017 | TSTLB526939 |
| 4 | 10 | pancreatic beta primary cell male adult (30 years) | TSTBS914644 | TSTLB405642 |
| 5 | 5 | pancreatic beta primary cell female adult (56 years) | TSTBS816695 | TSTLB103531 |
| 5 | 11 | pancreatic beta primary cell female adult (56 years) | TSTBS836740 | TSTLB136629 |
| 5 | 18 | pancreatic beta primary cell female adult (56 years) | TSTBS474950 | TSTLB608985 |
| 5 | 24 | pancreatic beta primary cell female adult (56 years) | TSTBS989859 | TSTLB801357 |
| 5 | 2 | pancreatic beta primary cell female adult (56 years) | TSTBS694828 | TSTLB793485 |
| 5 | 8 | pancreatic beta primary cell female adult (56 years) | TSTBS855258 | TSTLB026913 |
| 5 | 14 | pancreatic beta primary cell female adult (56 years) | TSTBS881688 | TSTLB430615 |
| 5 | 16 | pancreatic beta primary cell female adult (56 years) | TSTBS142211 | TSTLB384560 |
| 5 | 23 | pancreatic beta primary cell female adult (56 years) | TSTBS861395 | TSTLB953501 |
| 5 | 12 | pancreatic beta primary cell female adult (56 years) | TSTBS325676 | TSTLB364077 |
| 5 | 20 | pancreatic beta primary cell female adult (56 years) | TSTBS913702 | TSTLB120538 |