Experiment summary for TSTSR412162
- Status: released
Summary
- Assay
- single cell isolation followed by RNA-seq (single cell RNA-seq)
- Biosample summary
- Homo sapiens pancreatic ductal cell female adult (48 years) and male adult (22 years) and male adult (23 years) and male adult (25 years) and male adult (27 years) and male adult (43 years)
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- E-MTAB-5061 pancreatic ductal cell sample scRNAseq for Health individuals
- Nucleic acid type
- RNA
- Library starting quantity
- 1cells
- Size range
- >100
- Strand specificity
- Non-strand-specific
- Platform
- Illumina HiSeq 2000
Attribution
AMP Consortium
- Award
- U01DK100554 (T2D AMP Consortium)
- Project
- AMP
- External resources
- EBI:E-MTAB-5061
- Aliases
- amp-t2d-consortium:E-MTAB-5061_scRNA_ductal_Health
- Date released
- July 24, 2018
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 3 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB330381 |
| 2 | 5 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB235972 |
| 2 | 7 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB570854 |
| 2 | 9 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB097145 |
| 2 | 12 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB990028 |
| 2 | 14 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB238160 |
| 2 | 19 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB625439 |
| 3 | 2 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB163794 |
| 1 | 1 | pancreatic ductal primary cell male adult (43 years) | TSTBS842292 | TSTLB623486 |
| 2 | 10 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB105972 |
| 2 | 15 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB346765 |
| 2 | 18 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB672101 |
| 3 | 5 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB169614 |
| 3 | 9 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB656058 |
| 3 | 14 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB315712 |
| 3 | 16 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB408788 |
| 3 | 22 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB707066 |
| 3 | 25 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB510455 |
| 3 | 32 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB438700 |
| 3 | 36 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB477578 |
| 1 | 4 | pancreatic ductal primary cell male adult (43 years) | TSTBS842292 | TSTLB076655 |
| 2 | 13 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB769479 |
| 3 | 1 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB921715 |
| 3 | 18 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB107703 |
| 3 | 33 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB678611 |
| 1 | 2 | pancreatic ductal primary cell male adult (43 years) | TSTBS842292 | TSTLB421240 |
| 1 | 3 | pancreatic ductal primary cell male adult (43 years) | TSTBS842292 | TSTLB209840 |
| 2 | 8 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB171490 |
| 2 | 17 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB217187 |
| 3 | 6 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB141332 |
| 3 | 10 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB688986 |
| 3 | 11 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB738417 |
| 3 | 27 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB722066 |
| 3 | 30 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB810496 |
| 3 | 34 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB045540 |
| 3 | 38 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB331520 |
| 3 | 43 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB994154 |
| 2 | 1 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB686357 |
| 2 | 4 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB329754 |
| 3 | 3 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB083748 |
| 3 | 4 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB093750 |
| 3 | 8 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB411887 |
| 3 | 13 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB923770 |
| 3 | 20 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB363137 |
| 3 | 29 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB020456 |
| 3 | 40 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB525453 |
| 3 | 44 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB959128 |
| 3 | 45 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB242499 |
| 2 | 2 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB610129 |
| 2 | 6 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB950349 |
| 2 | 11 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB153782 |
| 2 | 16 | pancreatic ductal primary cell male adult (25 years) | TSTBS725698 | TSTLB530420 |
| 3 | 7 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB035133 |
| 3 | 15 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB347712 |
| 3 | 24 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB518772 |
| 3 | 35 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB397255 |
| 3 | 37 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB884113 |
| 3 | 41 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB651537 |
| 3 | 12 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB767964 |
| 3 | 17 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB691851 |
| 3 | 19 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB241662 |
| 3 | 21 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB970333 |
| 3 | 23 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB065490 |
| 3 | 26 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB481707 |
| 3 | 28 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB843203 |
| 3 | 31 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB858016 |
| 3 | 39 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB415207 |
| 3 | 42 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB903673 |
| 3 | 47 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB848510 |
| 3 | 51 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB721422 |
| 3 | 53 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB919668 |
| 3 | 57 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB738617 |
| 3 | 62 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB124399 |
| 3 | 64 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB584519 |
| 3 | 67 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB119930 |
| 4 | 1 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB957503 |
| 4 | 8 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB376854 |
| 3 | 46 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB197477 |
| 3 | 48 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB042175 |
| 3 | 50 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB087930 |
| 3 | 55 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB715259 |
| 3 | 60 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB675767 |
| 3 | 66 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB405572 |
| 4 | 4 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB402580 |
| 5 | 5 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB786374 |
| 5 | 9 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB892227 |
| 5 | 19 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB353067 |
| 5 | 22 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB087652 |
| 6 | 5 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB789272 |
| 6 | 8 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB672268 |
| 6 | 10 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB254708 |
| 3 | 49 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB543897 |
| 3 | 52 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB060635 |
| 3 | 59 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB764160 |
| 3 | 65 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB448173 |
| 4 | 2 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB583909 |
| 4 | 6 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB663645 |
| 5 | 3 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB893518 |
| 5 | 16 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB278131 |
| 5 | 18 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB671098 |
| 5 | 23 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB181156 |
| 6 | 3 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB935493 |
| 6 | 9 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB809718 |
| 6 | 12 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB249837 |
| 3 | 58 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB607415 |
| 4 | 3 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB143725 |
| 4 | 7 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB283211 |
| 5 | 1 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB928440 |
| 5 | 7 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB351405 |
| 5 | 12 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB149172 |
| 5 | 14 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB317081 |
| 6 | 6 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB702136 |
| 3 | 54 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB382395 |
| 3 | 56 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB731162 |
| 3 | 61 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB264002 |
| 3 | 63 | pancreatic ductal primary cell female adult (48 years) | TSTBS528691 | TSTLB807147 |
| 4 | 5 | pancreatic ductal primary cell male adult (22 years) | TSTBS483726 | TSTLB517381 |
| 5 | 6 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB761917 |
| 5 | 21 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB242627 |
| 6 | 1 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB359949 |
| 6 | 11 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB287063 |
| 5 | 2 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB543331 |
| 5 | 4 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB346757 |
| 5 | 11 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB175483 |
| 5 | 13 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB537473 |
| 5 | 17 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB359654 |
| 6 | 2 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB383981 |
| 6 | 14 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB945087 |
| 5 | 8 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB542215 |
| 5 | 10 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB761975 |
| 5 | 15 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB461457 |
| 5 | 20 | pancreatic ductal primary cell male adult (27 years) | TSTBS539550 | TSTLB813285 |
| 6 | 4 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB173480 |
| 6 | 7 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB213700 |
| 6 | 13 | pancreatic ductal primary cell male adult (23 years) | TSTBS398194 | TSTLB766159 |