Experiment summary for TSTSR432421
- Status: released
Summary
- Assay
- single cell isolation followed by RNA-seq (single cell RNA-seq)
- Biosample summary
- Homo sapiens pancreatic beta cell female adult (37 years) and female adult (55 years) and male adult (52 years) and male adult (57 years)
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- E-MTAB-5061 pancreatic beta cell sample scRNAseq for T2D individuals
- Nucleic acid type
- RNA
- Library starting quantity
- 1cells
- Size range
- >100
- Strand specificity
- Non-strand-specific
- Platform
- Illumina HiSeq 2000
Attribution
AMP Consortium
- Award
- U01DK100554 (T2D AMP Consortium)
- Project
- AMP
- External resources
- EBI:E-MTAB-5061
- Aliases
- amp-t2d-consortium:E-MTAB-5061_scRNA_beta_T2D
- Date released
- July 24, 2018
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 5 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB343480 |
| 1 | 8 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB107081 |
| 1 | 10 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB808027 |
| 2 | 4 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB037988 |
| 2 | 14 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB094257 |
| 3 | 10 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB034304 |
| 4 | 1 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB331560 |
| 4 | 3 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB484619 |
| 4 | 11 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB225304 |
| 1 | 2 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB013646 |
| 2 | 6 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB675424 |
| 2 | 9 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB846457 |
| 1 | 4 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB629468 |
| 1 | 7 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB685716 |
| 2 | 1 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB782270 |
| 3 | 2 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB756185 |
| 2 | 3 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB242969 |
| 2 | 5 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB273583 |
| 2 | 7 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB493720 |
| 2 | 8 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB797501 |
| 2 | 10 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB250611 |
| 3 | 4 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB844824 |
| 3 | 6 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB906878 |
| 4 | 4 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB877401 |
| 4 | 9 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB480683 |
| 4 | 10 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB055734 |
| 4 | 15 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB611285 |
| 4 | 19 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB184260 |
| 4 | 21 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB969420 |
| 1 | 1 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB522728 |
| 1 | 3 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB501871 |
| 1 | 6 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB309196 |
| 2 | 2 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB100991 |
| 1 | 9 | pancreatic beta primary cell male adult (57 years) | TSTBS974735 | TSTLB071414 |
| 2 | 11 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB254256 |
| 2 | 12 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB062843 |
| 2 | 13 | pancreatic beta primary cell female adult (37 years) | TSTBS713049 | TSTLB484467 |
| 3 | 1 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB631958 |
| 3 | 3 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB019592 |
| 3 | 5 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB336905 |
| 3 | 7 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB313547 |
| 3 | 8 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB108198 |
| 3 | 9 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB781884 |
| 3 | 11 | pancreatic beta primary cell male adult (52 years) | TSTBS360295 | TSTLB834009 |
| 4 | 2 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB980713 |
| 4 | 5 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB559155 |
| 4 | 6 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB519834 |
| 4 | 7 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB394585 |
| 4 | 8 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB609950 |
| 4 | 12 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB430720 |
| 4 | 13 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB933554 |
| 4 | 14 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB526678 |
| 4 | 16 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB494355 |
| 4 | 18 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB606269 |
| 4 | 20 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB082744 |
| 4 | 22 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB858524 |
| 4 | 17 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB157114 |
| 4 | 25 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB992821 |
| 4 | 33 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB522745 |
| 4 | 44 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB844160 |
| 4 | 23 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB210164 |
| 4 | 24 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB716282 |
| 4 | 32 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB829844 |
| 4 | 42 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB478495 |
| 4 | 46 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB762656 |
| 4 | 47 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB968042 |
| 4 | 51 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB611228 |
| 4 | 56 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB811747 |
| 4 | 27 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB076575 |
| 4 | 29 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB748015 |
| 4 | 35 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB178991 |
| 4 | 40 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB912665 |
| 4 | 41 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB454800 |
| 4 | 64 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB794062 |
| 4 | 26 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB779318 |
| 4 | 30 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB751755 |
| 4 | 28 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB717201 |
| 4 | 31 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB672282 |
| 4 | 34 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB421351 |
| 4 | 36 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB816720 |
| 4 | 38 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB387502 |
| 4 | 45 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB782306 |
| 4 | 37 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB785095 |
| 4 | 39 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB509308 |
| 4 | 43 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB790254 |
| 4 | 53 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB940163 |
| 4 | 54 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB611689 |
| 4 | 58 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB264969 |
| 4 | 62 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB468567 |
| 4 | 48 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB517808 |
| 4 | 50 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB996788 |
| 4 | 57 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB617966 |
| 4 | 61 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB598452 |
| 4 | 49 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB430675 |
| 4 | 52 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB450363 |
| 4 | 55 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB035021 |
| 4 | 59 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB352057 |
| 4 | 60 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB891522 |
| 4 | 63 | pancreatic beta primary cell female adult (55 years) | TSTBS864911 | TSTLB675350 |