Experiment summary for TSTSR626739
- Status: released
Summary
- Assay
- single cell isolation followed by RNA-seq (single cell RNA-seq)
- Biosample summary
- Homo sapiens pancreatic beta cell female adult (42 years) and female adult (55 years) and male adult (51 year)
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- GEO GSE86473 single cell RNA-seq of human pancreatic pancreatic beta cell for T2D individual
- Nucleic acid type
- RNA
- Library starting quantity
- 1cells
- Size range
- >200
- Strand specificity
- Non-strand-specific
- Platform
- Illumina NextSeq 500
Attribution
AMP Consortium
- Award
- U01DK100554 (T2D AMP Consortium)
- Project
- AMP
- External resources
- Aliases
- amp-t2d-consortium:GSE86473_scRNA_Beta_T2D
- Date released
- July 23, 2018
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 5 | pancreatic beta primary cell male adult (51 year) | TSTBS114690 | TSTLB617463 |
| 2 | 2 | pancreatic beta primary cell female adult (55 years) | TSTBS180791 | TSTLB770614 |
| 2 | 8 | pancreatic beta primary cell female adult (55 years) | TSTBS507145 | TSTLB465339 |
| 2 | 17 | pancreatic beta primary cell female adult (55 years) | TSTBS294829 | TSTLB752339 |
| 2 | 19 | pancreatic beta primary cell female adult (55 years) | TSTBS909036 | TSTLB603462 |
| 2 | 25 | pancreatic beta primary cell female adult (55 years) | TSTBS821436 | TSTLB663771 |
| 3 | 4 | pancreatic beta primary cell female adult (42 years) | TSTBS080377 | TSTLB448134 |
| 3 | 10 | pancreatic beta primary cell female adult (42 years) | TSTBS905641 | TSTLB367860 |
| 1 | 3 | pancreatic beta primary cell male adult (51 year) | TSTBS826460 | TSTLB500702 |
| 1 | 8 | pancreatic beta primary cell male adult (51 year) | TSTBS803243 | TSTLB227361 |
| 1 | 10 | pancreatic beta primary cell male adult (51 year) | TSTBS756109 | TSTLB491614 |
| 2 | 4 | pancreatic beta primary cell female adult (55 years) | TSTBS640635 | TSTLB366208 |
| 2 | 10 | pancreatic beta primary cell female adult (55 years) | TSTBS651933 | TSTLB539008 |
| 2 | 13 | pancreatic beta primary cell female adult (55 years) | TSTBS670062 | TSTLB176231 |
| 2 | 16 | pancreatic beta primary cell female adult (55 years) | TSTBS104619 | TSTLB338959 |
| 1 | 1 | pancreatic beta primary cell male adult (51 year) | TSTBS134152 | TSTLB893087 |
| 1 | 7 | pancreatic beta primary cell male adult (51 year) | TSTBS545020 | TSTLB995252 |
| 2 | 1 | pancreatic beta primary cell female adult (55 years) | TSTBS034710 | TSTLB007863 |
| 2 | 7 | pancreatic beta primary cell female adult (55 years) | TSTBS415614 | TSTLB037196 |
| 2 | 15 | pancreatic beta primary cell female adult (55 years) | TSTBS409392 | TSTLB817303 |
| 2 | 18 | pancreatic beta primary cell female adult (55 years) | TSTBS309729 | TSTLB506651 |
| 2 | 24 | pancreatic beta primary cell female adult (55 years) | TSTBS968398 | TSTLB143330 |
| 3 | 3 | pancreatic beta primary cell female adult (42 years) | TSTBS355298 | TSTLB930912 |
| 3 | 7 | pancreatic beta primary cell female adult (42 years) | TSTBS217690 | TSTLB028903 |
| 3 | 9 | pancreatic beta primary cell female adult (42 years) | TSTBS711290 | TSTLB547209 |
| 3 | 11 | pancreatic beta primary cell female adult (42 years) | TSTBS382674 | TSTLB178273 |
| 3 | 17 | pancreatic beta primary cell female adult (42 years) | TSTBS951235 | TSTLB359959 |
| 3 | 23 | pancreatic beta primary cell female adult (42 years) | TSTBS240455 | TSTLB217610 |
| 1 | 2 | pancreatic beta primary cell male adult (51 year) | TSTBS856329 | TSTLB310689 |
| 1 | 4 | pancreatic beta primary cell male adult (51 year) | TSTBS776514 | TSTLB687621 |
| 1 | 11 | pancreatic beta primary cell male adult (51 year) | TSTBS747188 | TSTLB567415 |
| 2 | 5 | pancreatic beta primary cell female adult (55 years) | TSTBS408814 | TSTLB696829 |
| 2 | 12 | pancreatic beta primary cell female adult (55 years) | TSTBS772067 | TSTLB364826 |
| 2 | 22 | pancreatic beta primary cell female adult (55 years) | TSTBS393815 | TSTLB364262 |
| 3 | 1 | pancreatic beta primary cell female adult (42 years) | TSTBS648656 | TSTLB530809 |
| 3 | 15 | pancreatic beta primary cell female adult (42 years) | TSTBS822242 | TSTLB231470 |
| 3 | 21 | pancreatic beta primary cell female adult (42 years) | TSTBS850511 | TSTLB715424 |
| 3 | 28 | pancreatic beta primary cell female adult (42 years) | TSTBS575534 | TSTLB967537 |
| 3 | 40 | pancreatic beta primary cell female adult (42 years) | TSTBS540331 | TSTLB897290 |
| 3 | 46 | pancreatic beta primary cell female adult (42 years) | TSTBS462111 | TSTLB751243 |
| 3 | 49 | pancreatic beta primary cell female adult (42 years) | TSTBS941928 | TSTLB269845 |
| 1 | 6 | pancreatic beta primary cell male adult (51 year) | TSTBS052463 | TSTLB182361 |
| 1 | 12 | pancreatic beta primary cell male adult (51 year) | TSTBS658453 | TSTLB563001 |
| 2 | 6 | pancreatic beta primary cell female adult (55 years) | TSTBS059998 | TSTLB889717 |
| 2 | 14 | pancreatic beta primary cell female adult (55 years) | TSTBS164855 | TSTLB104507 |
| 2 | 21 | pancreatic beta primary cell female adult (55 years) | TSTBS967771 | TSTLB676951 |
| 2 | 27 | pancreatic beta primary cell female adult (55 years) | TSTBS313308 | TSTLB360050 |
| 3 | 6 | pancreatic beta primary cell female adult (42 years) | TSTBS169532 | TSTLB075642 |
| 3 | 13 | pancreatic beta primary cell female adult (42 years) | TSTBS667846 | TSTLB581643 |
| 3 | 19 | pancreatic beta primary cell female adult (42 years) | TSTBS348108 | TSTLB592867 |
| 3 | 25 | pancreatic beta primary cell female adult (42 years) | TSTBS373739 | TSTLB398392 |
| 3 | 32 | pancreatic beta primary cell female adult (42 years) | TSTBS883504 | TSTLB233099 |
| 3 | 34 | pancreatic beta primary cell female adult (42 years) | TSTBS950294 | TSTLB834310 |
| 3 | 37 | pancreatic beta primary cell female adult (42 years) | TSTBS382776 | TSTLB720565 |
| 3 | 39 | pancreatic beta primary cell female adult (42 years) | TSTBS928751 | TSTLB243778 |
| 3 | 41 | pancreatic beta primary cell female adult (42 years) | TSTBS629699 | TSTLB786131 |
| 3 | 53 | pancreatic beta primary cell female adult (42 years) | TSTBS981035 | TSTLB943971 |
| 1 | 9 | pancreatic beta primary cell male adult (51 year) | TSTBS712362 | TSTLB799314 |
| 2 | 3 | pancreatic beta primary cell female adult (55 years) | TSTBS000557 | TSTLB271491 |
| 2 | 9 | pancreatic beta primary cell female adult (55 years) | TSTBS202237 | TSTLB921289 |
| 2 | 11 | pancreatic beta primary cell female adult (55 years) | TSTBS668158 | TSTLB340399 |
| 2 | 23 | pancreatic beta primary cell female adult (55 years) | TSTBS143902 | TSTLB593739 |
| 3 | 2 | pancreatic beta primary cell female adult (42 years) | TSTBS672872 | TSTLB063932 |
| 3 | 8 | pancreatic beta primary cell female adult (42 years) | TSTBS694198 | TSTLB386824 |
| 3 | 12 | pancreatic beta primary cell female adult (42 years) | TSTBS739006 | TSTLB535689 |
| 3 | 20 | pancreatic beta primary cell female adult (42 years) | TSTBS719300 | TSTLB148528 |
| 3 | 27 | pancreatic beta primary cell female adult (42 years) | TSTBS686945 | TSTLB342516 |
| 3 | 30 | pancreatic beta primary cell female adult (42 years) | TSTBS011186 | TSTLB009320 |
| 3 | 36 | pancreatic beta primary cell female adult (42 years) | TSTBS724190 | TSTLB675516 |
| 3 | 44 | pancreatic beta primary cell female adult (42 years) | TSTBS838803 | TSTLB620816 |
| 3 | 48 | pancreatic beta primary cell female adult (42 years) | TSTBS947446 | TSTLB720146 |
| 3 | 50 | pancreatic beta primary cell female adult (42 years) | TSTBS548264 | TSTLB688689 |
| 3 | 57 | pancreatic beta primary cell female adult (42 years) | TSTBS678906 | TSTLB608874 |
| 2 | 20 | pancreatic beta primary cell female adult (55 years) | TSTBS204046 | TSTLB142331 |
| 2 | 26 | pancreatic beta primary cell female adult (55 years) | TSTBS729153 | TSTLB214525 |
| 3 | 5 | pancreatic beta primary cell female adult (42 years) | TSTBS003933 | TSTLB735588 |
| 3 | 14 | pancreatic beta primary cell female adult (42 years) | TSTBS221386 | TSTLB120173 |
| 3 | 18 | pancreatic beta primary cell female adult (42 years) | TSTBS948503 | TSTLB402090 |
| 3 | 24 | pancreatic beta primary cell female adult (42 years) | TSTBS958319 | TSTLB451800 |
| 3 | 26 | pancreatic beta primary cell female adult (42 years) | TSTBS315753 | TSTLB828299 |
| 3 | 33 | pancreatic beta primary cell female adult (42 years) | TSTBS364934 | TSTLB486321 |
| 3 | 38 | pancreatic beta primary cell female adult (42 years) | TSTBS933613 | TSTLB714174 |
| 3 | 45 | pancreatic beta primary cell female adult (42 years) | TSTBS661275 | TSTLB851359 |
| 3 | 47 | pancreatic beta primary cell female adult (42 years) | TSTBS263526 | TSTLB384201 |
| 3 | 51 | pancreatic beta primary cell female adult (42 years) | TSTBS259762 | TSTLB698151 |
| 3 | 56 | pancreatic beta primary cell female adult (42 years) | TSTBS377922 | TSTLB596172 |
| 3 | 16 | pancreatic beta primary cell female adult (42 years) | TSTBS204310 | TSTLB535056 |
| 3 | 22 | pancreatic beta primary cell female adult (42 years) | TSTBS925494 | TSTLB110525 |
| 3 | 29 | pancreatic beta primary cell female adult (42 years) | TSTBS086027 | TSTLB713946 |
| 3 | 42 | pancreatic beta primary cell female adult (42 years) | TSTBS039064 | TSTLB590417 |
| 3 | 54 | pancreatic beta primary cell female adult (42 years) | TSTBS501152 | TSTLB293588 |
| 3 | 31 | pancreatic beta primary cell female adult (42 years) | TSTBS197407 | TSTLB101209 |
| 3 | 35 | pancreatic beta primary cell female adult (42 years) | TSTBS905943 | TSTLB050258 |
| 3 | 43 | pancreatic beta primary cell female adult (42 years) | TSTBS456065 | TSTLB987947 |
| 3 | 52 | pancreatic beta primary cell female adult (42 years) | TSTBS054437 | TSTLB648490 |
| 3 | 55 | pancreatic beta primary cell female adult (42 years) | TSTBS761848 | TSTLB753427 |