Experiment summary for TSTSR955785
- Status: archived
Summary
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens islet of Langerhans female adult (52 years) and female adult (57 years) and male adult (53 years) and male adult (54 years) and male adult (59 years)
- Biosample Type
- tissue
- Replication type
- anisogenic
- Description
- ATAC-seq data from Mark McCarthy's lab human islet sample 1-5
- Nucleic acid type
- DNA
- Strand specificity
- Non-strand-specific
- Platform
- Illumina HiSeq 2500
Attribution
AMP Consortium
- Award
- WT098381 (Mark McCarthy, Oxford)
- Project
- AMP
- Aliases
- mark-mccarthy:ATACseq_isletOfLangerhans_humanSample1-5
- Date released
- March 14, 2019
- Submitter comment
- 2.3) MappingQCq FLASHgalUnmapped trimmed read pairs that overlapped were combined with FLASH to reconstruct read pairs without overlap and remapped with bowtie https://ccb. 4) Peak callingeMACS2olsPeak calling performed using MACS2""unmahttps://github.com/taoliu/MACS hg19 regions"net http://bedtools.readthedocs.io/en/latest/
Anisogenic replicates
| Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | islet of Langerhans tissue male adult (59 years) | TSTBS532785 | TSTLB759668 |
| 2 | 1 | islet of Langerhans tissue female adult (57 years) | TSTBS103863 | TSTLB034742 |
| 3 | 1 | islet of Langerhans tissue male adult (53 years) | TSTBS112493 | TSTLB106944 |
| 4 | 1 | islet of Langerhans tissue female adult (52 years) | TSTBS305778 | TSTLB780966 |
| 5 | 1 | islet of Langerhans tissue male adult (54 years) | TSTBS736096 | TSTLB206728 |