Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 913accessible chromatin
  • 817binding sites
  • 689gene expression
  • 172differential activity
  • 141variant allelic effects
  • Fine-mapped variants
  • 60eQTL
  • 13caQTL
  • 5hQTL
  • 4sQTL
  • 3meQTL
  • 3other
  • 2variant to gene
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2589February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 373February, 2024
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 155May, 2020
  • 128August, 2021
  • 101October, 2022
  • 89January, 2020
  • 64March, 2023
  • 63February, 2020
  • 56January, 2021
  • 56March, 2020
  • 49May, 2022
  • 44November, 2022
  • 38May, 2024
  • 35August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 11March, 2025
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 5January, 2022
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5976bed bed3+
  • 3469tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10400Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 966ENCODE
  • 640DGA
  • 534AMP
  • 406T2DKP
  • 320T1D
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 153 T2DKP
  • 94CMDGA
  • 79GTEx
  • 67HPAP
  • 26FNIH_projects-heart
  • 16STARNET
  • 12FNIH_projects-liver
  • 12ROADMAP
  • 10T2D
Biosample type
  • 5163tissue
  • 2467primary cell
  • 2342cell line
  • 470in vitro differentiated cells
  • 4stem cell
Organ
  • 2895vasculature
  • 2853bodily fluid
  • 2842blood
  • 2830blood vessel
  • 2658vein
  • 957epithelium
  • 651kidney
  • 457connective tissue
  • 414brain
  • 367musculature of body
  • 310lung
  • 286intestine
  • 264pancreas
  • 245heart
  • 233limb
  • 215embryo
  • 201skin of body
  • 172large intestine
  • 156liver
  • 145extraembryonic component
  • 118stomach
  • 108eye
  • 89bone element
  • 87mammary gland
  • 84adipose tissue
  • 83small intestine
  • 82uterus
  • 77prostate gland
  • 72adrenal gland
  • 72placenta
  • 67artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 47gonad
  • 42esophagus
  • 39spinal cord
  • 33spleen
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 24testis
  • 22ovary
  • 22thyroid gland
  • 21nerve
  • 18mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 10tongue
  • 10urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9741AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 9community
  • 5ITG
Genome assembly (visualization)
  • 6924hg19
  • 1735GRCh38
  • 4hg18
annotation_type!
  • Fine-mapped variants
software_used.software.name!
  • qTLtools
BIOSAMPLE
TYPE

10448 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
gene expression
differential activity
variant allelic effects
eQTL
caQTL
hQTL
sQTL
meQTL
other
variant to gene
representative DNase hypersensitivity sites
tissue
whole blood26351
heart37201215132
stomach402111931
kidney2914216101711
brain29163182111
primary cell
monocyte286181151211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530143
B cell1710862
endothelial cell371152922
cell line
HeLa-S355531
A549211911812
H1-hESC13911128
K5627231712
MCF-7962513
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616411
embryonic stem cell11561
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego