Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1709candidate regulatory elements
  • 1355target gene predictions
  • 977histone modifications
  • 944chromatin state
  • accessible chromatin
  • 816binding sites
  • 685gene expression
  • 484differential activity
  • 180eQTL
  • 141variant allelic effects
  • 74Fine-mapped variants
  • 25caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2578February, 2021
  • 2505September, 2022
  • 361May, 2021
  • 324February, 2024
  • 320May, 2026
  • 286September, 2023
  • 128March, 2020
  • 111November, 2021
  • 102January, 2022
  • 101May, 2020
  • 101October, 2022
  • 98August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 35August, 2017
  • 35May, 2022
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 21July, 2025
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 5178bed bed3+
  • 3551tsv
  • 869bed bed9
  • 112txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 18bigWig
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 10048Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1558ChIP-Atlas
  • 960ENCODE
  • 568DGA
  • 371T1D
  • 320pyxis
  • 284AMP
  • 281KPMP
  • 206BLUEPRINT
  • 1744DN
  • 151GTEx
  • 151T2DKP
  • 138 T2DKP
  • 101T2D
  • 101eQTLCatalogue
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5090tissue
  • 2368primary cell
  • 2186cell line
  • 401in vitro differentiated cells
  • 4stem cell
Organ
  • 2869vasculature
  • 2841bodily fluid
  • 2830blood
  • 2822blood vessel
  • 2656vein
  • 748epithelium
  • 619kidney
  • 443brain
  • 432connective tissue
  • 355musculature of body
  • 345heart
  • 296lung
  • 268intestine
  • 236pancreas
  • 224limb
  • 203embryo
  • 191skin of body
  • 164large intestine
  • 163liver
  • 137extraembryonic component
  • 131adipose tissue
  • 111stomach
  • 81small intestine
  • 80mammary gland
  • 80uterus
  • 74bone element
  • 73prostate gland
  • 72artery
  • 69placenta
  • 66adrenal gland
  • 61penis
  • 60__MARKER__
  • 60ureter
  • 54lymph node
  • 50eye
  • 47thymus
  • 45gonad
  • 41esophagus
  • 41spinal cord
  • 32spleen
  • 24testis
  • 22lymphoid tissue
  • 22nerve
  • 21ovary
  • 21thyroid gland
  • 20lymphatic vessel
  • 18mouth
  • 13bronchus
  • 13pituitary gland
  • 12breast
  • 11bone marrow
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 4trachea
  • 3nose
  • 1pericardium
Project
  • 9606AMP
  • 281KPMP
  • 111ENCODE
  • 31T1D
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 6094hg19
  • 1517GRCh38
  • 4hg18
annotation_type!
  • accessible chromatin
biosample_term_name!
  • BJAB cell
BIOSAMPLE
TYPE

10051 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
gene expression
differential activity
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
caQTL
hQTL
sQTL
meQTL
other
tissue
whole blood26351
heart37201211412
stomach402111911
brain29163181121
kidney29142161711
primary cell
monocyte2861154412
common myeloid progenitor, CD34-positive271413
endothelial cell3712925223
B cell17108213
CD8-positive, alpha-beta T cell753013
cell line
HeLa-S355531
A54921191182
H1-hESC1391128
K562723172
MCF-796253
in vitro differentiated cells
hematopoietic multipotent progenitor cell191011011
neural progenitor cell551547
adipocyte461611
cardiomyocytes11
mesenchymal stem cell33121
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego