Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2974target gene predictions
  • 2638pQTL
  • 1709candidate regulatory elements
  • accessible chromatin
  • 977histone modifications
  • 944chromatin state
  • 816binding sites
  • 674gene expression
  • 484differential activity
  • 180eQTL
  • 141variant allelic effects
  • 25caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 2Fine-mapped variants
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2579February, 2021
  • 2505September, 2022
  • 1661July, 2026
  • 363May, 2021
  • 324February, 2024
  • 320May, 2026
  • 286September, 2023
  • March, 2020
  • 111November, 2021
  • 102January, 2022
  • 101May, 2020
  • 101October, 2022
  • 98August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 35August, 2017
  • 35May, 2022
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 21July, 2025
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 6797bed bed3+
  • 3472tsv
  • 869bed bed9
  • 112txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 18bigWig
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 11584Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1559ChIP-Atlas
  • 1458ENCODE-rE2G
  • 958ENCODE
  • 519DGA
  • 371T1D
  • 320pyxis
  • 282AMP
  • 281KPMP
  • 206BLUEPRINT
  • 203HDMA
  • 1744DN
  • 151T2DKP
  • 110 T2DKP
  • 101T2D
  • 101eQTLCatalogue
  • 79GTEx
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5650tissue
  • 3109primary cell
  • 2389cell line
  • 435in vitro differentiated cells
  • 2stem cell
Organ
  • 3353blood
  • 2854vasculature
  • 2841bodily fluid
  • 2823blood vessel
  • 2656vein
  • 733epithelium
  • 703kidney
  • 672brain
  • 431heart
  • 420connective tissue
  • 406lung
  • 346musculature of body
  • 335intestine
  • 264skin of body
  • 245pancreas
  • 215large intestine
  • 215limb
  • 202embryo
  • 192liver
  • 165extraembryonic component
  • 131stomach
  • 127adipose tissue
  • 97mammary gland
  • 93placenta
  • 93small intestine
  • 91bone element
  • 90adrenal gland
  • 90uterus
  • 89muscle organ
  • 83eye
  • 82prostate gland
  • 73thymus
  • 71artery
  • 69ureter
  • 61penis
  • 60__MARKER__
  • 58gonad
  • 54lymph node
  • 48spleen
  • 44spinal cord
  • 43esophagus
  • 37thyroid gland
  • 29ovary
  • 29testis
  • 22lymphoid tissue
  • 20mouth
  • 19nerve
  • 17lymphatic vessel
  • 16skeleton
  • 14breast
  • 13bronchus
  • 13pituitary gland
  • 12vagina
  • 11bone marrow
  • 11tongue
  • 11urinary bladder
  • 4trachea
  • 3nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 11142AMP
  • 281KPMP
  • 111ENCODE
  • 31T1D
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 5980hg19
  • 3106GRCh38
  • 4hg18
annotation_type!
  • accessible chromatin
month_released!
  • March, 2020
BIOSAMPLE
TYPE

11587 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
histone modifications
chromatin state
binding sites
gene expression
differential activity
eQTL
variant allelic effects
caQTL
sQTL
hQTL
variant to gene
meQTL
other
Fine-mapped variants
representative DNase hypersensitivity sites
tissue
whole blood26351
heart37371211412
stomach424011911
head of caudate nucleus86
brain30293181121
primary cell
monocyte28611544121
CD8-positive, alpha-beta T cell2773013
T-cell644
common myeloid progenitor, CD34-positive262713
endothelial cell17312925223
cell line
A54933211182
HeLa-S359531
H1-hESC3911128
K562307172
MCF-7139253
in vitro differentiated cells
hematopoietic multipotent progenitor cell221911011
neural progenitor cell551547
adipocyte741611
cardiomyocytes11
mesenchymal stem cell43121
stem cell
H1-hESC1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego