Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1218target gene predictions
  • 939chromatin state
  • accessible chromatin
  • 863histone modifications
  • 817binding sites
  • 599gene expression
  • 186eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 4sQTL
  • 4variant to gene
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2579February, 2021
  • 2505September, 2022
  • May, 2021
  • 329February, 2024
  • 286September, 2023
  • 128March, 2020
  • 111November, 2021
  • 102January, 2022
  • 101May, 2020
  • 101October, 2022
  • 98August, 2021
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 35May, 2022
  • 30March, 2024
  • 28January, 2021
  • 24January, 2020
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 7February, 2023
  • 5October, 2019
  • 2January, 2018
  • 2January, 2025
  • 2November, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2020
Available data
  • 4922bed bed3+
  • 3488tsv
  • 864bed bed9
  • 108txt
  • 35bigBed bed9
  • 34bed bed9+
  • 26csv
  • 18bigWig
  • 7bigBed narrowPeak
  • 1bam
Organism
  • 9389Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1559ChIP-Atlas
  • 960ENCODE
  • 426DGA
  • 281KPMP
  • 257AMP
  • 179T1D
  • 1744DN
  • 151GTEx
  • 151T2DKP
  • 109 T2DKP
  • 101T2D
  • 101eQTLCatalogue
  • 76BLUEPRINT
  • 55HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
Biosample type
  • 5096tissue
  • 2133cell line
  • 1790primary cell
  • 367in vitro differentiated cells
  • 4stem cell
Organ
  • 2874vasculature
  • 2843bodily fluid
  • 2832blood
  • 2819blood vessel
  • 2655vein
  • 719epithelium
  • 602kidney
  • 414brain
  • 376connective tissue
  • 347musculature of body
  • 292lung
  • 262intestine
  • 227heart
  • 221limb
  • 196embryo
  • 187pancreas
  • 186skin of body
  • 159large intestine
  • 136liver
  • 134extraembryonic component
  • 109stomach
  • 89adipose tissue
  • 80small intestine
  • 78mammary gland
  • 78uterus
  • 74bone element
  • 71prostate gland
  • 68placenta
  • 66artery
  • 64adrenal gland
  • 60penis
  • 60ureter
  • 53lymph node
  • 50eye
  • 46thymus
  • 44gonad
  • 41esophagus
  • 40spinal cord
  • 31spleen
  • 24testis
  • 22lymphoid tissue
  • 22nerve
  • 20lymphatic vessel
  • 20ovary
  • 20thyroid gland
  • 18mouth
  • 13bronchus
  • 11bone marrow
  • 11breast
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 4trachea
  • 3nose
  • 3pituitary gland
  • 1pericardium
Project
  • 8951AMP
  • 281KPMP
  • 111ENCODE
  • 31T1D
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 5825hg19
  • 1433GRCh38
  • 4hg18
annotation_type!
  • accessible chromatin
month_released!
  • May, 2021
BIOSAMPLE
TYPE

9392 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
chromatin state
histone modifications
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
variant to gene
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart3720211132
stomach401919111
brain29161831121
kidney29141621711
cell line
HeLa-S355431
A54921181812
H1-hESC1381128
K562722712
MCF-795523
primary cell
common myeloid progenitor, CD34-positive271313
B cell1798
CD4-positive, alpha-beta memory T cell1499
endothelial cell37128122
hepatocyte22141132
in vitro differentiated cells
hematopoietic multipotent progenitor cell19101011
neural progenitor cell554157
adipocyte426111
cardiomyocytes11
extended pluripotent stem (EPS) cells9
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego