Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 3018target gene predictions
  • 2638pQTL
  • 1709candidate regulatory elements
  • accessible chromatin
  • 977histone modifications
  • 726binding sites
  • 685gene expression
  • 484differential activity
  • 180eQTL
  • 141variant allelic effects
  • 74Fine-mapped variants
  • 25caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2579February, 2021
  • 1672September, 2022
  • 1661July, 2026
  • 358May, 2021
  • 320May, 2026
  • 319February, 2024
  • 286September, 2023
  • 128March, 2020
  • 111November, 2021
  • 102January, 2022
  • 98August, 2021
  • 98May, 2020
  • 70March, 2023
  • 64February, 2020
  • 40May, 2024
  • 30March, 2024
  • 28January, 2021
  • 21July, 2025
  • 18January, 2020
  • 10October, 2022
  • 9August, 2018
  • 7February, 2023
  • 4March, 2026
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1May, 2022
  • 1November, 2019
  • 1November, 2020
Available data
  • 6711bed bed3+
  • 3551tsv
  • 112txt
  • 26csv
  • 16bigWig
  • 7bigBed narrowPeak
Organism
  • 10677Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1666EpiMap
  • 1559ChIP-Atlas
  • 1458ENCODE-rE2G
  • 869ENCODE
  • 560DGA
  • 371T1D
  • 320pyxis
  • 283AMP
  • 281KPMP
  • 203HDMA
  • 1744DN
  • 172BLUEPRINT
  • 151GTEx
  • 149T2DKP
  • 138 T2DKP
  • 101T2D
  • 101eQTLCatalogue
  • 55HPAP
  • 26FNIH_projects-heart
  • 24CMDGA
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5243tissue
  • 2894primary cell
  • 2137cell line
  • 401in vitro differentiated cells
  • 3stem cell
Organ
  • 3309blood
  • 2829vasculature
  • 2805blood vessel
  • 2795bodily fluid
  • 2651vein
  • 681epithelium
  • 632brain
  • 627kidney
  • 395heart
  • 370connective tissue
  • 332lung
  • 280musculature of body
  • 277intestine
  • 237pancreas
  • 225skin of body
  • 184liver
  • 179large intestine
  • 174embryo
  • 174limb
  • 131extraembryonic component
  • 125adipose tissue
  • 108stomach
  • 89muscle organ
  • 85uterus
  • 79mammary gland
  • 77adrenal gland
  • 76placenta
  • 75bone element
  • 74small intestine
  • 72eye
  • 69prostate gland
  • 68artery
  • 63thymus
  • 60__MARKER__
  • 56ureter
  • 50gonad
  • 49penis
  • 44lymph node
  • 43spleen
  • 38spinal cord
  • 37esophagus
  • 33thyroid gland
  • 26ovary
  • 24testis
  • 18nerve
  • 17lymphoid tissue
  • 16mouth
  • 15lymphatic vessel
  • 13pituitary gland
  • 13skeleton
  • 12breast
  • 11bronchus
  • 10urinary bladder
  • 10vagina
  • 9bone marrow
  • 9tongue
  • 4trachea
  • 2nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 10235AMP
  • 281KPMP
  • 111ENCODE
  • 31T1D
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 5062hg19
  • 2309GRCh38
  • 4hg18
annotation_type!
  • accessible chromatin
software_used.software.name!
  • chromhmm
BIOSAMPLE
TYPE

10680 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
histone modifications
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
head of caudate nucleus86
stomach4240111
heart383711412
kidney282921711
primary cell
monocyte28611544121
T-cell644
CD8-positive, alpha-beta T cell277303
endothelial cell17312925223
CD4-positive, alpha-beta T cell528
cell line
HeLa-S3595
A549332111
H1-hESC391118
K56230711
MCF-713922
in vitro differentiated cells
hematopoietic multipotent progenitor cell2219111
neural progenitor cell65157
adipocyte74111
cardiomyocytes11
progenitor cell of endocrine pancreas19
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego