Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1343candidate regulatory elements
  • 985target gene predictions
  • 767histone modifications
  • 747chromatin state
  • binding sites
  • 429accessible chromatin
  • 211gene expression
  • 139eQTL
  • 82Fine-mapped variants
  • 60variant allelic effects
  • 20differential activity
  • 4variant to gene
  • 2caQTL
  • 2other
  • 2sQTL
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2024September, 2022
  • 1487February, 2021
  • 236June, 2020
  • 226February, 2024
  • 133May, 2021
  • 122March, 2020
  • 85August, 2021
  • 69January, 2022
  • 69May, 2020
  • 66January, 2020
  • 48February, 2020
  • 35November, 2022
  • 32March, 2025
  • 29August, 2017
  • 29March, 2024
  • 28February, 2023
  • 15March, 2023
  • 14November, 2019
  • 9May, 2019
  • 9May, 2022
  • 8April, 2019
  • 7October, 2019
  • 5September, 2023
  • 3September, 2018
  • 2January, 2018
  • 2October, 2022
  • 1August, 2020
  • 1August, 2022
Available data
  • 3698bed bed3+
  • 2979tsv
  • 705bed bed9
  • 136bigWig
  • 36bigBed bed9
  • 24csv
  • 7bed bed9+
  • 1bam
Organism
  • 7431Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2019EpiMap
  • 985ChIP-Atlas
  • 690ENCODE
  • 269DGA
  • 1684DN
  • 160AMP
  • 150GTEx
  • 93 T2DKP
  • 91T1D
  • 85CMDGA
  • 66T2D
  • 66eQTLCatalogue
  • 47T2DKP
  • 37STARNET
  • 12HPAP
  • 8BLUEPRINT
Biosample type
  • 5287tissue
  • primary cell
  • 1709cell line
  • 432in vitro differentiated cells
  • 4stem cell
Organ
  • 2806bodily fluid
  • 2796blood
  • 2736vasculature
  • 2732blood vessel
  • 2637vein
  • 418brain
  • 337kidney
  • 328musculature of body
  • 270lung
  • 260intestine
  • 241limb
  • 221heart
  • 181embryo
  • 177connective tissue
  • 162large intestine
  • 147pancreas
  • 117epithelium
  • 108stomach
  • 105extraembryonic component
  • 96adipose tissue
  • 92liver
  • 92skin of body
  • 82eye
  • 80small intestine
  • 75uterus
  • 69bone element
  • 64ureter
  • 62adrenal gland
  • 62placenta
  • 60prostate gland
  • 50lymph node
  • 49artery
  • 47thymus
  • 43gonad
  • 37spinal cord
  • 36mammary gland
  • 35esophagus
  • 33spleen
  • 25nerve
  • 24lymphoid tissue
  • 22testis
  • 21ovary
  • 20penis
  • 20thyroid gland
  • 18skeleton
  • 15mouth
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 4nose
  • 2lymphatic vessel
Project
  • 7419AMP
  • 9community
  • 5ITG
  • 1T1D
Genome assembly (visualization)
  • 4445hg19
  • 1164GRCh38
  • 3hg18
annotation_type!
  • binding sites
biosample_type!
  • primary cell
BIOSAMPLE
TYPE

7434 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
gene expression
eQTL
Fine-mapped variants
variant allelic effects
differential activity
variant to gene
caQTL
other
sQTL
representative DNase hypersensitivity sites
tissue
whole blood26351
heart3720121532
stomach4021119311
kidney291421610711
brain29163182121
cell line
HeLa-S35553
A54921191181
H1-hESC1391118
K562723171
MCF-796251
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell191011011
adipocyte461641
embryonic stem cell1156
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego