Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
85
candidate regulatory elements
52
target gene predictions
44
chromatin state
12
accessible chromatin
binding sites
5
histone modifications
4
eQTL
3
gene expression
Date released
122
September, 2022
49
February, 2021
9
June, 2020
6
May, 2021
6
November, 2021
March, 2020
3
August, 2017
3
February, 2024
3
January, 2022
2
March, 2024
1
February, 2020
1
January, 2020
Available data
157
bed bed3+
41
bed bed9
4
tsv
3
bigWig
Organism
205
Homo sapiens
Biosample type
165
tissue
30
cell line
10
primary cell
Organ
910
epithelium
642
kidney
428
connective tissue
412
brain
359
musculature of body
301
lung
281
intestine
264
pancreas
237
heart
236
vasculature
233
limb
201
embryo
186
skin of body
176
blood vessel
172
bodily fluid
167
large intestine
162
blood
143
extraembryonic component
135
liver
118
stomach
103
eye
83
small intestine
81
bone element
79
adipose tissue
79
uterus
75
mammary gland
72
adrenal gland
70
placenta
70
prostate gland
64
ureter
63
artery
57
penis
50
lymph node
47
thymus
46
gonad
44
esophagus
38
spinal cord
32
spleen
24
lymphoid tissue
23
testis
23
thyroid gland
22
lymphatic vessel
22
nerve
22
ovary
19
mouth
vein
18
skeleton
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
tongue
10
vagina
9
urinary bladder
4
nose
3
trachea
1
pericardium
Project
199
AMP
6
ENCODE
Genome assembly (visualization)
199
hg19
53
GRCh38
annotation_type!
binding sites
month_released!
March, 2020
organ_slims!
vein
BIOSAMPLE
TYPE
205 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
eQTL
gene expression
tissue
large intestine
27
14
13
1
1
spinal cord
14
8
7
1
1
sigmoid colon
10
6
5
1
transverse colon
8
5
4
1
1
colonic mucosa
4
2
3
1
+ See 8 more…
cell line
HT-29
2
2
1
1
1
HCT116
2
3
1
SW480
2
1
1
1
1
RKO
1
1
1
colon epithelial cell
1
1
1
+ See 4 more…
primary cell
colon epithelial cell
3
3
astrocyte of the spinal cord
2
1
1
See all biosamples
Download