Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
467
accessible chromatin
459
gene expression
368
target gene predictions
363
candidate regulatory elements
205
histone modifications
149
differential activity
93
binding sites
77
variant allelic effects
46
eQTL
33
chromatin state
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
449
February, 2021
328
November, 2021
323
September, 2022
281
September, 2023
255
May, 2021
127
February, 2024
83
May, 2020
56
January, 2021
51
June, 2020
51
March, 2023
40
May, 2022
39
August, 2021
39
May, 2024
37
January, 2022
24
October, 2022
19
April, 2020
19
January, 2020
16
February, 2020
9
August, 2018
9
November, 2022
6
August, 2017
5
October, 2019
3
November, 2020
1
June, 2021
1
March, 2020
1
March, 2024
Available data
1583
bed bed3+
573
tsv
390
bigWig
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2227
Homo sapiens
Biosample type
2272
primary cell
2148
cell line
2115
tissue
424
in vitro differentiated cells
4
stem cell
Organ
783
epithelium
300
kidney
263
connective tissue
154
vasculature
126
pancreas
101
blood vessel
83
skin of body
liver
45
musculature of body
39
mammary gland
35
penis
32
extraembryonic component
31
brain
30
lung
29
heart
26
artery
23
intestine
20
eye
18
embryo
18
lymphatic vessel
16
vein
14
bronchus
13
bone element
12
bone marrow
11
adrenal gland
11
stomach
9
blood
9
bodily fluid
9
esophagus
9
placenta
8
prostate gland
6
large intestine
5
trachea
5
uterus
4
gonad
4
small intestine
3
mouth
3
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1585
AMP
328
ENCODE
281
KPMP
57
T1D
19
LungMap
2
community
Genome assembly (visualization)
1633
hg19
540
GRCh38
annotation_type!
caQTL
files.file_type!
bed bed9
organ_slims!
liver
BIOSAMPLE
TYPE
2272 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
differential activity
binding sites
variant allelic effects
eQTL
chromatin state
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
5
7
30
1
common myeloid progenitor, CD34-positive
14
27
endothelial cell
15
9
7
3
1
2
2
1
B cell
6
2
10
17
+ See 446 more…
See all biosamples
Download