Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
1357
target gene predictions
histone modifications
chromatin state
904
accessible chromatin
817
binding sites
670
gene expression
170
eQTL
140
variant allelic effects
116
differential activity
72
Fine-mapped variants
13
caQTL
5
hQTL
4
sQTL
3
meQTL
3
other
3
pQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
913
February, 2021
840
September, 2022
371
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
270
May, 2021
152
May, 2020
128
March, 2020
111
August, 2021
106
January, 2022
101
October, 2022
83
January, 2020
March, 2023
64
February, 2020
56
January, 2021
44
November, 2022
32
February, 2023
30
March, 2024
19
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
3227
bed bed3+
843
tsv
535
bigWig
108
txt
24
csv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
4232
Homo sapiens
Biosample type
1676
primary cell
1241
cell line
1107
tissue
251
in vitro differentiated cells
3
stem cell
Organ
725
epithelium
410
kidney
299
connective tissue
235
brain
177
pancreas
171
vasculature
148
musculature of body
127
blood vessel
127
heart
119
bodily fluid
119
embryo
115
blood
109
intestine
105
lung
98
limb
98
liver
81
skin of body
78
eye
68
uterus
64
large intestine
59
adipose tissue
52
artery
49
extraembryonic component
43
bone element
43
stomach
39
mammary gland
31
adrenal gland
31
prostate gland
29
lymph node
27
small intestine
25
placenta
24
gonad
21
esophagus
21
penis
20
ureter
19
spinal cord
17
thymus
15
nerve
14
lymphatic vessel
13
spleen
12
pituitary gland
12
testis
11
ovary
11
skeleton
11
thyroid gland
11
vein
9
bronchus
9
lymphoid tissue
7
bone marrow
7
mouth
6
breast
5
urinary bladder
4
tongue
4
vagina
3
trachea
2
nose
1
pericardium
Project
3580
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
5
ITG
2
community
Genome assembly (visualization)
3364
hg19
889
GRCh38
4
hg18
annotation_type!
candidate regulatory elements
chromatin state
histone modifications
month_released!
March, 2023
October, 2019
BIOSAMPLE
TYPE
4280 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
accessible chromatin
binding sites
gene expression
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
hQTL
sQTL
meQTL
other
pQTL
variant to gene
representative DNase hypersensitivity sites
primary cell
monocyte
2
18
1
15
4
2
1
1
endothelial cell
7
15
2
9
1
2
2
fibroblast
4
16
1
2
6
macrophage
3
12
2
7
3
1
hepatocyte
3
8
1
13
2
+ See 411 more…
cell line
HeLa-S3
55
1
H1-hESC
39
1
2
8
K562
23
1
2
A549
19
1
2
EndoC_BH1
1
8
1
8
1
1
+ See 618 more…
tissue
islet of Langerhans
1
6
2
11
12
1
1
kidney
14
10
1
7
1
1
heart
20
5
1
3
2
retina
3
23
1
1
1
1
stomach
21
3
1
1
+ See 211 more…
in vitro differentiated cells
neural progenitor cell
5
10
7
hematopoietic multipotent progenitor cell
10
1
1
1
adipocyte
6
3
1
1
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 90 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download