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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
44
target gene predictions
36
chromatin state
10
accessible chromatin
6
binding sites
5
histone modifications
eQTL
2
gene expression
Date released
66
September, 2022
10
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
2
February, 2024
2
March, 2024
1
March, 2020
1
October, 2022
Available data
68
bed bed3+
33
bed bed9
3
bigWig
2
tsv
Organism
103
Homo sapiens
Biosample type
73
tissue
24
cell line
6
primary cell
Organ
844
epithelium
487
kidney
357
connective tissue
320
brain
234
pancreas
219
musculature of body
202
vasculature
179
lung
173
intestine
169
bodily fluid
169
heart
162
blood
158
embryo
151
blood vessel
141
limb
126
skin of body
124
liver
103
large intestine
90
eye
86
extraembryonic component
73
uterus
67
stomach
64
bone element
59
mammary gland
58
artery
56
adipose tissue
50
prostate gland
46
small intestine
44
adrenal gland
43
placenta
41
lymph node
36
penis
33
ureter
30
gonad
29
thymus
25
esophagus
25
spinal cord
18
spleen
17
lymphatic vessel
16
nerve
15
lymphoid tissue
15
testis
15
vein
14
ovary
14
skeleton
14
thyroid gland
12
bronchus
12
pituitary gland
11
bone marrow
10
mouth
7
breast
7
urinary bladder
6
tongue
5
trachea
5
vagina
3
nose
1
pericardium
Project
97
AMP
6
ENCODE
Genome assembly (visualization)
101
hg19
41
GRCh38
annotation_type!
candidate regulatory elements
eQTL
sQTL
files.file_type!
bigBed bed9
BIOSAMPLE
TYPE
103 results
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Clear Filters
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
gene expression
tissue
large intestine
14
13
1
1
sigmoid colon
7
5
1
transverse colon
5
4
1
colonic mucosa
2
3
1
mucosa of rectum
2
3
+ See 5 more…
cell line
HT-29
2
1
1
1
1
SW480
1
1
1
1
1
HCT-116 cell
1
1
2
HCT116
3
1
RKO
1
1
1
+ See 1 more…
primary cell
colon epithelial cell
3
3
See all biosamples
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