Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
65
target gene predictions
59
chromatin state
10
accessible chromatin
8
histone modifications
6
binding sites
3
eQTL
gene expression
3
variant allelic effects
Date released
110
September, 2022
13
February, 2021
10
June, 2020
6
May, 2021
5
February, 2024
4
August, 2017
3
January, 2022
2
March, 2020
1
October, 2022
Available data
96
bed bed3+
55
bed bed9
Organism
154
Homo sapiens
Biosample type
126
tissue
24
cell line
4
primary cell
Organ
378
epithelium
336
brain
264
connective tissue
232
kidney
207
musculature of body
170
bodily fluid
167
lung
165
pancreas
163
blood
157
vasculature
154
heart
154
intestine
146
embryo
145
limb
127
blood vessel
117
skin of body
104
liver
97
large intestine
86
eye
84
extraembryonic component
70
uterus
57
adipose tissue
57
bone element
57
stomach
55
artery
53
mammary gland
50
prostate gland
43
small intestine
42
placenta
41
lymph node
36
penis
34
adrenal gland
33
ureter
29
gonad
28
thymus
26
spinal cord
22
esophagus
18
spleen
17
nerve
16
testis
16
vein
14
lymphoid tissue
14
skeleton
12
ovary
12
pituitary gland
12
thyroid gland
10
mouth
9
bronchus
8
bone marrow
8
lymphatic vessel
7
breast
6
urinary bladder
5
tongue
5
trachea
5
vagina
3
nose
Project
154
AMP
19
ENCODE
Genome assembly (visualization)
151
hg19
60
GRCh38
annotation_type!
candidate regulatory elements
gene expression
BIOSAMPLE
TYPE
154 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
chromatin state
accessible chromatin
histone modifications
binding sites
eQTL
variant allelic effects
tissue
small intestine
17
15
1
1
large intestine
14
13
1
1
sigmoid colon
7
5
1
transverse colon
5
4
1
1
Peyer's patch
3
3
1
+ See 11 more…
cell line
HT-29
2
1
1
1
1
SW480
1
1
1
1
1
HCT-116 cell
1
1
2
HCT116
3
1
RKO
1
1
1
+ See 1 more…
primary cell
enterocyte
3
intestinal epithelial cell
1
See all biosamples
Download